Rosetta  2020.37
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Functions
dna::specificity Namespace Reference

Functions

BooleanOptionKey const specificity ("dna:specificity")
 
BooleanOptionKey const exclude_dna_dna ("dna:specificity:exclude_dna_dna")
 
RealVectorOptionKey const params ("dna:specificity:params")
 
FileVectorOptionKey const frag_files ("dna:specificity:frag_files")
 
BooleanOptionKey const only_repack ("dna:specificity:only_repack")
 
BooleanOptionKey const design_DNA ("dna:specificity:design_DNA")
 
BooleanOptionKey const soft_rep ("dna:specificity:soft_rep")
 
BooleanOptionKey const dump_pdbs ("dna:specificity:dump_pdbs")
 
BooleanOptionKey const fast ("dna:specificity:fast")
 
BooleanOptionKey const randomize_motif ("dna:specificity:randomize_motif")
 
RealOptionKey const Wfa_elec ("dna:specificity:Wfa_elec")
 
RealOptionKey const Wdna_bs ("dna:specificity:Wdna_bs")
 
RealOptionKey const Wdna_bp ("dna:specificity:Wdna_bp")
 
RealOptionKey const minimize_tolerance ("dna:specificity:minimize_tolerance")
 
StringOptionKey const weights_tag ("dna:specificity:weights_tag")
 
StringOptionKey const weights_tag_list ("dna:specificity:weights_tag_list")
 
StringOptionKey const min_type ("dna:specificity:min_type")
 
StringOptionKey const mode ("dna:specificity:mode")
 
StringOptionKey const score_function ("dna:specificity:score_function")
 
BooleanOptionKey const pre_minimize ("dna:specificity:pre_minimize")
 
BooleanOptionKey const post_minimize ("dna:specificity:post_minimize")
 
BooleanOptionKey const pre_pack ("dna:specificity:pre_pack")
 
IntegerOptionKey const nloop ("dna:specificity:nloop")
 
IntegerOptionKey const n_inner ("dna:specificity:n_inner")
 
IntegerOptionKey const n_outer ("dna:specificity:n_outer")
 
IntegerOptionKey const nstep_water ("dna:specificity:nstep_water")
 
IntegerOptionKey const moving_jump ("dna:specificity:moving_jump")
 
IntegerOptionKey const motif_begin ("dna:specificity:motif_begin")
 
IntegerOptionKey const motif_size ("dna:specificity:motif_size")
 
StringVectorOptionKey const pdb_pos ("dna:specificity:pdb_pos")
 
StringVectorOptionKey const methylate ("dna:specificity:methylate")
 
RealVectorOptionKey const dna_backbone_torsion_sdevs ("dna:specificity:dna_backbone_torsion_sdevs")
 
RealOptionKey const dna_sugar_torsion_sdev ("dna:specificity:dna_sugar_torsion_sdev")
 
RealOptionKey const dna_chi_torsion_sdev ("dna:specificity:dna_chi_torsion_sdev")
 
StringOptionKey const lk_ball_wtd_tag ("dna:specificity:lk_ball_wtd_tag")
 
BooleanOptionKey const lk_ball_for_bb ("dna:specificity:lk_ball_for_bb")
 
RealOptionKey const lk_ball_ramp_width_A2 ("dna:specificity:lk_ball_ramp_width_A2")
 
RealOptionKey const lk_ball_overlap_gap ("dna:specificity:lk_ball_overlap_gap")
 
RealOptionKey const lk_ball_overlap_width_A2 ("dna:specificity:lk_ball_overlap_width_A2")
 
RealOptionKey const lk_ball_water_fade ("dna:specificity:lk_ball_water_fade")
 
RealVectorOptionKey const lk_ball_wtd_prefactors ("dna:specificity:lk_ball_wtd_prefactors")
 
RealVectorOptionKey const lk_ball_waters_sp2 ("dna:specificity:lk_ball_waters_sp2")
 
RealVectorOptionKey const lk_ball_waters_sp3 ("dna:specificity:lk_ball_waters_sp3")
 
RealVectorOptionKey const lk_ball_waters_ring ("dna:specificity:lk_ball_waters_ring")
 
RealOptionKey const lk_ball_waters_donor ("dna:specificity:lk_ball_waters_donor")
 
RealOptionKey const lk_ball_bridge_angle_widthscale ("dna:specificity:lk_ball_bridge_angle_widthscale")
 

Function Documentation

BooleanOptionKey const dna::specificity::design_DNA ( "dna:specificity:design_DNA"  )
RealVectorOptionKey const dna::specificity::dna_backbone_torsion_sdevs ( "dna:specificity:dna_backbone_torsion_sdevs"  )
RealOptionKey const dna::specificity::dna_chi_torsion_sdev ( "dna:specificity:dna_chi_torsion_sdev"  )
RealOptionKey const dna::specificity::dna_sugar_torsion_sdev ( "dna:specificity:dna_sugar_torsion_sdev"  )
BooleanOptionKey const dna::specificity::dump_pdbs ( "dna:specificity:dump_pdbs"  )
BooleanOptionKey const dna::specificity::exclude_dna_dna ( "dna:specificity:exclude_dna_dna"  )
BooleanOptionKey const dna::specificity::fast ( "dna:specificity:fast"  )
FileVectorOptionKey const dna::specificity::frag_files ( "dna:specificity:frag_files"  )
RealOptionKey const dna::specificity::lk_ball_bridge_angle_widthscale ( "dna:specificity:lk_ball_bridge_angle_widthscale"  )
BooleanOptionKey const dna::specificity::lk_ball_for_bb ( "dna:specificity:lk_ball_for_bb"  )
RealOptionKey const dna::specificity::lk_ball_overlap_gap ( "dna:specificity:lk_ball_overlap_gap"  )
RealOptionKey const dna::specificity::lk_ball_overlap_width_A2 ( "dna:specificity:lk_ball_overlap_width_A2"  )
RealOptionKey const dna::specificity::lk_ball_ramp_width_A2 ( "dna:specificity:lk_ball_ramp_width_A2"  )
RealOptionKey const dna::specificity::lk_ball_water_fade ( "dna:specificity:lk_ball_water_fade"  )
RealOptionKey const dna::specificity::lk_ball_waters_donor ( "dna:specificity:lk_ball_waters_donor"  )
RealVectorOptionKey const dna::specificity::lk_ball_waters_ring ( "dna:specificity:lk_ball_waters_ring"  )
RealVectorOptionKey const dna::specificity::lk_ball_waters_sp2 ( "dna:specificity:lk_ball_waters_sp2"  )
RealVectorOptionKey const dna::specificity::lk_ball_waters_sp3 ( "dna:specificity:lk_ball_waters_sp3"  )
RealVectorOptionKey const dna::specificity::lk_ball_wtd_prefactors ( "dna:specificity:lk_ball_wtd_prefactors"  )
StringOptionKey const dna::specificity::lk_ball_wtd_tag ( "dna:specificity:lk_ball_wtd_tag"  )
StringVectorOptionKey const dna::specificity::methylate ( "dna:specificity:methylate"  )
StringOptionKey const dna::specificity::min_type ( "dna:specificity:min_type"  )
RealOptionKey const dna::specificity::minimize_tolerance ( "dna:specificity:minimize_tolerance"  )
StringOptionKey const dna::specificity::mode ( "dna:specificity:mode"  )
IntegerOptionKey const dna::specificity::motif_begin ( "dna:specificity:motif_begin"  )
IntegerOptionKey const dna::specificity::motif_size ( "dna:specificity:motif_size"  )
IntegerOptionKey const dna::specificity::moving_jump ( "dna:specificity:moving_jump"  )
IntegerOptionKey const dna::specificity::n_inner ( "dna:specificity:n_inner"  )
IntegerOptionKey const dna::specificity::n_outer ( "dna:specificity:n_outer"  )
IntegerOptionKey const dna::specificity::nloop ( "dna:specificity:nloop"  )
IntegerOptionKey const dna::specificity::nstep_water ( "dna:specificity:nstep_water"  )
BooleanOptionKey const dna::specificity::only_repack ( "dna:specificity:only_repack"  )
RealVectorOptionKey const dna::specificity::params ( "dna:specificity:params"  )
StringVectorOptionKey const dna::specificity::pdb_pos ( "dna:specificity:pdb_pos"  )
BooleanOptionKey const dna::specificity::post_minimize ( "dna:specificity:post_minimize"  )
BooleanOptionKey const dna::specificity::pre_minimize ( "dna:specificity:pre_minimize"  )
BooleanOptionKey const dna::specificity::pre_pack ( "dna:specificity:pre_pack"  )
BooleanOptionKey const dna::specificity::randomize_motif ( "dna:specificity:randomize_motif"  )
StringOptionKey const dna::specificity::score_function ( "dna:specificity:score_function"  )
BooleanOptionKey const dna::specificity::soft_rep ( "dna:specificity:soft_rep"  )
BooleanOptionKey const dna::specificity::specificity ( "dna:specificity"  )
RealOptionKey const dna::specificity::Wdna_bp ( "dna:specificity:Wdna_bp"  )
RealOptionKey const dna::specificity::Wdna_bs ( "dna:specificity:Wdna_bs"  )
StringOptionKey const dna::specificity::weights_tag ( "dna:specificity:weights_tag"  )
StringOptionKey const dna::specificity::weights_tag_list ( "dna:specificity:weights_tag_list"  )
RealOptionKey const dna::specificity::Wfa_elec ( "dna:specificity:Wfa_elec"  )