Rosetta  2020.46
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Namespaces | Variables
basic::options::OptionKeys::in Namespace Reference

Namespaces

 dbms
 
 file
 
 path
 
 rdf
 

Variables

BooleanOptionKey const in
 
FileVectorOptionKey const fconfig
 
BooleanOptionKey const no_fconfig
 
BooleanOptionKey const skip_classic_cart_setup
 
BooleanOptionKey const skip_new_cart_setup
 
StringOptionKey const Ntermini
 
StringOptionKey const Ctermini
 
BooleanOptionKey const use_truncated_termini
 
BooleanOptionKey const ignore_unrecognized_res
 
BooleanOptionKey const ignore_waters
 
StringOptionKey const water_type_if_unspecified
 
BooleanOptionKey const guarantee_no_DNA
 
BooleanOptionKey const add_orbitals
 
BooleanOptionKey const show_all_fixes
 
BooleanOptionKey const include_sugars
 
BooleanOptionKey const include_lipids
 
BooleanOptionKey const include_surfaces
 
BooleanOptionKey const read_only_ATOM_entries
 
BooleanOptionKey const auto_detect_glycan_connections
 
RealOptionKey const max_bond_length
 
RealOptionKey const min_bond_length
 
RealOptionKey const glycan_virtual_offset
 
BooleanOptionKey const membrane
 
BooleanOptionKey const remember_unrecognized_res
 
BooleanOptionKey const remember_unrecognized_water
 
BooleanOptionKey const preserve_crystinfo
 
BooleanOptionKey const detect_oops
 
BooleanOptionKey const detect_disulf
 
RealOptionKey const detect_disulf_tolerance
 
BooleanOptionKey const constraints_from_link_records
 
BooleanOptionKey const auto_setup_metals
 
BooleanOptionKey const prevent_auto_setup_metal_bb_variants
 
RealOptionKey const metals_detection_LJ_multiplier
 
RealOptionKey const metals_distance_constraint_multiplier
 
RealOptionKey const metals_angle_constraint_multiplier
 
StringVectorOptionKey const name3_property_codes
 
StringVectorOptionKey const alternate_3_letter_codes
 
BooleanOptionKey const maintain_links
 
FileOptionKey const fix_disulf
 
BooleanOptionKey const missing_density_to_jump
 
IntegerVectorOptionKey const target_residues
 
IntegerVectorOptionKey const replonly_residues
 
BooleanOptionKey const replonly_loops
 
BooleanOptionKey const use_database
 
StringVectorOptionKey const select_structures_from_database
 

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::in::add_orbitals

Referenced by add_rosetta_options_0().

StringVectorOptionKey const basic::options::OptionKeys::in::alternate_3_letter_codes

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::auto_detect_glycan_connections

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::auto_setup_metals

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::constraints_from_link_records

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::in::Ctermini

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::detect_disulf

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::detect_disulf_tolerance

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::detect_oops

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::in::fconfig

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::in::fix_disulf

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::glycan_virtual_offset

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::guarantee_no_DNA

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::ignore_unrecognized_res

Referenced by add_rosetta_options_0(), and main().

BooleanOptionKey const basic::options::OptionKeys::in::ignore_waters

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::in
BooleanOptionKey const basic::options::OptionKeys::in::include_lipids

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::include_sugars

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::include_surfaces

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::maintain_links

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::max_bond_length

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::membrane

Referenced by add_rosetta_options_0(), and main().

RealOptionKey const basic::options::OptionKeys::in::metals_angle_constraint_multiplier

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::metals_detection_LJ_multiplier

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::metals_distance_constraint_multiplier

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::min_bond_length

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::missing_density_to_jump

Referenced by add_rosetta_options_0(), and main().

StringVectorOptionKey const basic::options::OptionKeys::in::name3_property_codes

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::no_fconfig

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::in::Ntermini

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::preserve_crystinfo

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::prevent_auto_setup_metal_bb_variants

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::read_only_ATOM_entries

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::remember_unrecognized_res

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::remember_unrecognized_water

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::replonly_loops

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::in::replonly_residues

Referenced by add_rosetta_options_0().

StringVectorOptionKey const basic::options::OptionKeys::in::select_structures_from_database

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::show_all_fixes

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::skip_classic_cart_setup

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::skip_new_cart_setup

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::in::target_residues

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::use_database

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::use_truncated_termini

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::in::water_type_if_unspecified

Referenced by add_rosetta_options_0().