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test.T500_Packing Namespace Reference

Functions

def elim_everything_except_G
 

Variables

tuple pose = core.import_pose.pose_from_file("../test/data/test_in.pdb")
 
tuple scorefxn = get_fa_scorefxn()
 
tuple task_pack = standard_packer_task(pose)
 
tuple pack = protocols.minimization_packing.PackRotamersMover( scorefxn, task_pack )
 
tuple rotamer_trials = protocols.minimization_packing.RotamerTrialsMover(scorefxn, task_pack)
 
tuple task_design = core.pack.task.TaskFactory.create_packer_task(pose)
 
tuple tf = standard_task_factory()
 
tuple pr = core.pack.task.operation.PreventRepacking()
 
tuple elimer = core.pack.rotamer_set.PyRotamerEliminator()
 
tuple elimerTO = core.pack.rotamer_set.PyRotamerEliminatorTaskOperation()
 
tuple pr2 = protocols.minimization_packing.PackRotamersMover()
 
tuple op_list = pyrosetta.rosetta.std.list_std_shared_ptr_core_pack_task_operation_TaskOperation_std_allocator_std_shared_ptr_core_pack_task_operation_TaskOperation_t()
 
tuple pose2 = pose_from_sequence( "FRED" )
 

Function Documentation

def test.T500_Packing.elim_everything_except_G (   pose,
  sfxn,
  task,
  graph,
  rotamer_sets 
)

Variable Documentation

tuple test.T500_Packing.elimer = core.pack.rotamer_set.PyRotamerEliminator()
tuple test.T500_Packing.elimerTO = core.pack.rotamer_set.PyRotamerEliminatorTaskOperation()
tuple test.T500_Packing.op_list = pyrosetta.rosetta.std.list_std_shared_ptr_core_pack_task_operation_TaskOperation_std_allocator_std_shared_ptr_core_pack_task_operation_TaskOperation_t()
tuple test.T500_Packing.pack = protocols.minimization_packing.PackRotamersMover( scorefxn, task_pack )
tuple test.T500_Packing.pose = core.import_pose.pose_from_file("../test/data/test_in.pdb")
tuple test.T500_Packing.pose2 = pose_from_sequence( "FRED" )
tuple test.T500_Packing.pr = core.pack.task.operation.PreventRepacking()
tuple test.T500_Packing.pr2 = protocols.minimization_packing.PackRotamersMover()
tuple test.T500_Packing.rotamer_trials = protocols.minimization_packing.RotamerTrialsMover(scorefxn, task_pack)

Referenced by main(), and rna_design_test().

tuple test.T500_Packing.scorefxn = get_fa_scorefxn()
tuple test.T500_Packing.task_design = core.pack.task.TaskFactory.create_packer_task(pose)
tuple test.T500_Packing.task_pack = standard_packer_task(pose)
tuple test.T500_Packing.tf = standard_task_factory()