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tcrmodel.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces

 basic
 Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
 
 basic::options
 
 basic::options::OptionKeys
 
 basic::options::OptionKeys::tcrmodel
 

Variables

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::tcrmodel
 
FileOptionKey const basic::options::OptionKeys::tcrmodel::ignore_list
 
RealOptionKey const basic::options::OptionKeys::tcrmodel::blastp_identity_cutoff
 
RealOptionKey const basic::options::OptionKeys::tcrmodel::template_identity_cutoff
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::include_ab_templates
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::dump_templates
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::skip_modeling
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::ab_template_db_path
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::tcr_template_db_path
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::minimize_model
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::relax_model
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::remodel_loop_cdr3a
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::remodel_loop_cdr3b
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::remodel_tcr_cdr3a_loop
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::remodel_tcr_cdr3b_loop
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::refine_tcr_cdr3a_loop
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::refine_tcr_cdr3b_loop
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::remodel_tcr_cdr3_loops
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::refine_tcr_cdr3_loops
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::refine_all_tcr_cdr_loops
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::use_user_templates
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_framework_template_id
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_framework_template_id
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_germline_template_id
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_germline_template_id
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr1_template_id
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr1_template_id
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr2_template_id
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr2_template_id
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr3_template_id
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr3_template_id
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_orientation_template_id
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_orientation_template_id
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_framework_template_pdb
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_framework_template_pdb
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_germline_template_pdb
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_germline_template_pdb
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr1_template_pdb
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr1_template_pdb
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr2_template_pdb
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr2_template_pdb
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr3_template_pdb
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr3_template_pdb
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_orientation_template_pdb
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_orientation_template_pdb
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::use_alpha_germline_templates
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::use_beta_germline_templates
 
BooleanOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr1a
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr2a
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr3a
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr1b
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr2b
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr3b
 
StringOptionKey const basic::options::OptionKeys::tcrmodel::anarci_path
 

Detailed Description

basic::options::OptionKeys collection

Author
Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)
James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)