Rosetta  2020.37
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Functions
score::rna Namespace Reference

Functions

BooleanOptionKey const rna ("score:rna")
 
StringOptionKey const rna_base_pair_xy_filename ("score:rna:rna_base_pair_xy_filename")
 
BooleanOptionKey const disable_orientation_dependent_rna_ch_o_bonds ("score:rna:disable_orientation_dependent_rna_ch_o_bonds")
 
StringOptionKey const rna_suite_potential ("score:rna:rna_suite_potential")
 
StringOptionKey const suiteness_bonus ("score:rna:suiteness_bonus")
 
BooleanOptionKey const rna_torsion_skip_chainbreak ("score:rna:rna_torsion_skip_chainbreak")
 
BooleanOptionKey const rna_chemical_shift_verbose ("score:rna:rna_chemical_shift_verbose")
 
BooleanOptionKey const rna_chemical_shift_larmord ("score:rna:rna_chemical_shift_larmord")
 
StringOptionKey const rna_chemical_shift_exp_data ("score:rna:rna_chemical_shift_exp_data")
 
StringOptionKey const rna_chemical_shift_larmord_par ("score:rna:rna_chemical_shift_larmord_par")
 
StringOptionKey const rna_chemical_shift_larmord_wt ("score:rna:rna_chemical_shift_larmord_wt")
 
StringOptionKey const rna_chemical_shift_larmord_ref ("score:rna:rna_chemical_shift_larmord_ref")
 
StringOptionKey const rna_chemical_shift_larmord_nei ("score:rna:rna_chemical_shift_larmord_nei")
 
RealOptionKey const rna_chemical_shift_larmord_cut ("score:rna:rna_chemical_shift_larmord_cut")
 
RealOptionKey const rna_chemical_shift_larmord_beta ("score:rna:rna_chemical_shift_larmord_beta")
 
StringOptionKey const rna_chemical_shift_H5_prime_mode ("score:rna:rna_chemical_shift_H5_prime_mode")
 
IntegerVectorOptionKey const rna_chemical_shift_include_res ("score:rna:rna_chemical_shift_include_res")
 
BooleanOptionKey const DMS_separate_features ("score:rna:DMS_separate_features")
 
BooleanOptionKey const DMS_careful_base_pair_classifier ("score:rna:DMS_careful_base_pair_classifier")
 
RealOptionKey const rna_chem_map_lores_weight ("score:rna:rna_chem_map_lores_weight")
 
BooleanOptionKey const use_2prime_OH_potential ("score:rna:use_2prime_OH_potential")
 
BooleanOptionKey const use_rna_chi_potential ("score:rna:use_rna_chi_potential")
 
BooleanOptionKey const include_neighbor_base_stacks ("score:rna:include_neighbor_base_stacks")
 
BooleanOptionKey const FA_low_res_rnp_scoring ("score:rna:FA_low_res_rnp_scoring")
 
RealOptionKey const free_suite_bonus ("score:rna:free_suite_bonus")
 
RealOptionKey const free_sugar_bonus ("score:rna:free_sugar_bonus")
 
RealOptionKey const free_2HOprime_bonus ("score:rna:free_2HOprime_bonus")
 
RealOptionKey const syn_G_potential_bonus ("score:rna:syn_G_potential_bonus")
 
BooleanOptionKey const rna_bulge_bonus_once_per_loop ("score:rna:rna_bulge_bonus_once_per_loop")
 
RealOptionKey const pack_phosphate_penalty ("score:rna:pack_phosphate_penalty")
 

Function Documentation

BooleanOptionKey const score::rna::disable_orientation_dependent_rna_ch_o_bonds ( "score:rna:disable_orientation_dependent_rna_ch_o_bonds"  )
BooleanOptionKey const score::rna::DMS_careful_base_pair_classifier ( "score:rna:DMS_careful_base_pair_classifier"  )
BooleanOptionKey const score::rna::DMS_separate_features ( "score:rna:DMS_separate_features"  )
BooleanOptionKey const score::rna::FA_low_res_rnp_scoring ( "score:rna:FA_low_res_rnp_scoring"  )
RealOptionKey const score::rna::free_2HOprime_bonus ( "score:rna:free_2HOprime_bonus"  )
RealOptionKey const score::rna::free_sugar_bonus ( "score:rna:free_sugar_bonus"  )
RealOptionKey const score::rna::free_suite_bonus ( "score:rna:free_suite_bonus"  )
BooleanOptionKey const score::rna::include_neighbor_base_stacks ( "score:rna:include_neighbor_base_stacks"  )
RealOptionKey const score::rna::pack_phosphate_penalty ( "score:rna:pack_phosphate_penalty"  )
BooleanOptionKey const score::rna::rna ( "score:rna"  )
StringOptionKey const score::rna::rna_base_pair_xy_filename ( "score:rna:rna_base_pair_xy_filename"  )
BooleanOptionKey const score::rna::rna_bulge_bonus_once_per_loop ( "score:rna:rna_bulge_bonus_once_per_loop"  )
RealOptionKey const score::rna::rna_chem_map_lores_weight ( "score:rna:rna_chem_map_lores_weight"  )
StringOptionKey const score::rna::rna_chemical_shift_exp_data ( "score:rna:rna_chemical_shift_exp_data"  )
StringOptionKey const score::rna::rna_chemical_shift_H5_prime_mode ( "score:rna:rna_chemical_shift_H5_prime_mode"  )
IntegerVectorOptionKey const score::rna::rna_chemical_shift_include_res ( "score:rna:rna_chemical_shift_include_res"  )
BooleanOptionKey const score::rna::rna_chemical_shift_larmord ( "score:rna:rna_chemical_shift_larmord"  )
RealOptionKey const score::rna::rna_chemical_shift_larmord_beta ( "score:rna:rna_chemical_shift_larmord_beta"  )
RealOptionKey const score::rna::rna_chemical_shift_larmord_cut ( "score:rna:rna_chemical_shift_larmord_cut"  )
StringOptionKey const score::rna::rna_chemical_shift_larmord_nei ( "score:rna:rna_chemical_shift_larmord_nei"  )
StringOptionKey const score::rna::rna_chemical_shift_larmord_par ( "score:rna:rna_chemical_shift_larmord_par"  )
StringOptionKey const score::rna::rna_chemical_shift_larmord_ref ( "score:rna:rna_chemical_shift_larmord_ref"  )
StringOptionKey const score::rna::rna_chemical_shift_larmord_wt ( "score:rna:rna_chemical_shift_larmord_wt"  )
BooleanOptionKey const score::rna::rna_chemical_shift_verbose ( "score:rna:rna_chemical_shift_verbose"  )
StringOptionKey const score::rna::rna_suite_potential ( "score:rna:rna_suite_potential"  )
BooleanOptionKey const score::rna::rna_torsion_skip_chainbreak ( "score:rna:rna_torsion_skip_chainbreak"  )
StringOptionKey const score::rna::suiteness_bonus ( "score:rna:suiteness_bonus"  )
RealOptionKey const score::rna::syn_G_potential_bonus ( "score:rna:syn_G_potential_bonus"  )
BooleanOptionKey const score::rna::use_2prime_OH_potential ( "score:rna:use_2prime_OH_potential"  )
BooleanOptionKey const score::rna::use_rna_chi_potential ( "score:rna:use_rna_chi_potential"  )