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generate_starting_zinc_sites.cc File Reference
#include <devel/init.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/TrialMover.hh>
#include <protocols/moves/RepeatMover.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/constraints/AngleConstraint.hh>
#include <core/scoring/constraints/DihedralConstraint.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/func/CircularHarmonicFunc.hh>
#include <core/scoring/rms_util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/util.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueType.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/id/AtomID_Map.hh>
#include <core/id/AtomID.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/string_util.hh>
#include <utility/vector1.hh>
#include <utility/VirtualBase.hh>
#include <numeric/random/random.hh>
#include <numeric/constants.hh>

Namespaces

 local
 

Functions

void mutate_residue (core::pose::Pose &pose, core::Size res_position, std::string target_res_name)
 
int main (int argc, char *argv[])
 

Variables

static basic::Tracer TR ("apps.pilot.guffysl.generate_starting_zinc_sites")
 
basic::options::IntegerOptionKey
const 
local::window_width ("window_width")
 
basic::options::IntegerOptionKey
const 
local::helix_length ("helix_length")
 
basic::options::StringOptionKey
const 
local::reference_zinc_site ("reference_zinc_site")
 
basic::options::IntegerOptionKey
const 
local::first_ref_his ("first_ref_his")
 
basic::options::IntegerOptionKey
const 
local::ref_zinc ("ref_zinc")
 
basic::options::RealOptionKey const local::temperature ("temperature")
 
basic::options::IntegerOptionKey
const 
local::n_moves ("n_moves")
 
basic::options::RealOptionKey const local::constraint_weight ("constraint_weight")
 
basic::options::RealOptionKey const local::max_angle ("max_angle")
 
basic::options::IntegerOptionKey
const 
local::small_moves ("small_moves")
 
basic::options::IntegerOptionKey
const 
local::shear_moves ("shear_moves")
 

Function Documentation

int main ( int  argc,
char *  argv[] 
)
void mutate_residue ( core::pose::Pose pose,
core::Size  res_position,
std::string  target_res_name 
)

Referenced by main().

Variable Documentation

basic::Tracer TR("apps.pilot.guffysl.generate_starting_zinc_sites")
static

Referenced by main().