Rosetta  2021.16
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Namespaces | Functions
OptionKeys.cc.gen5.hh File Reference

Namespaces

 abinitio
 
 abinitio::star
 
 abrelax
 
 AnchoredDesign
 
 AnchoredDesign::filters
 
 AnchoredDesign::akash
 
 AnchoredDesign::testing
 
 simple_metrics
 
 antibody
 
 antibody::design
 
 task_operations
 
 assembly
 
 backrub
 
 batch_relax
 
 bbg
 
 boinc
 
 broker
 
 bunsat_calc2
 
 canonical_sampling
 
 canonical_sampling::probabilities
 

Functions

BooleanOptionKey const abinitio::final_clean_relax ("abinitio:final_clean_relax")
 
BooleanOptionKey const abinitio::fastrelax ("abinitio:fastrelax")
 
BooleanOptionKey const abinitio::multifastrelax ("abinitio:multifastrelax")
 
BooleanOptionKey const abinitio::debug ("abinitio:debug")
 
BooleanOptionKey const abinitio::clear_pose_cache ("abinitio:clear_pose_cache")
 
BooleanOptionKey const abinitio::explicit_pdb_debug ("abinitio:explicit_pdb_debug")
 
BooleanOptionKey const abinitio::use_filters ("abinitio:use_filters")
 
BooleanOptionKey const abinitio::use_trRosetta_constraints ("abinitio:use_trRosetta_constraints")
 
RealOptionKey const abinitio::increase_cycles ("abinitio:increase_cycles")
 
IntegerOptionKey const abinitio::number_3mer_frags ("abinitio:number_3mer_frags")
 
IntegerOptionKey const abinitio::number_9mer_frags ("abinitio:number_9mer_frags")
 
RealOptionKey const abinitio::temperature ("abinitio:temperature")
 
RealOptionKey const abinitio::rg_reweight ("abinitio:rg_reweight")
 
RealOptionKey const abinitio::rsd_wt_helix ("abinitio:rsd_wt_helix")
 
RealOptionKey const abinitio::rsd_wt_strand ("abinitio:rsd_wt_strand")
 
RealOptionKey const abinitio::rsd_wt_loop ("abinitio:rsd_wt_loop")
 
BooleanOptionKey const abinitio::skip_convergence_check ("abinitio:skip_convergence_check")
 
FileVectorOptionKey const abinitio::stage1_patch ("abinitio:stage1_patch")
 
FileVectorOptionKey const abinitio::stage2_patch ("abinitio:stage2_patch")
 
FileVectorOptionKey const abinitio::stage3a_patch ("abinitio:stage3a_patch")
 
FileVectorOptionKey const abinitio::stage3b_patch ("abinitio:stage3b_patch")
 
FileVectorOptionKey const abinitio::stage4_patch ("abinitio:stage4_patch")
 
FileVectorOptionKey const abinitio::stage5_patch ("abinitio:stage5_patch")
 
BooleanOptionKey const abinitio::steal_3mers ("abinitio:steal_3mers")
 
BooleanOptionKey const abinitio::steal_9mers ("abinitio:steal_9mers")
 
BooleanOptionKey const abinitio::no_write_failures ("abinitio:no_write_failures")
 
BooleanOptionKey const abinitio::relax_failures ("abinitio:relax_failures")
 
BooleanOptionKey const abinitio::relax_with_jumps ("abinitio:relax_with_jumps")
 
BooleanOptionKey const abinitio::process_store ("abinitio:process_store")
 
IntegerVectorOptionKey const abinitio::fix_residues_to_native ("abinitio:fix_residues_to_native")
 
BooleanOptionKey const abinitio::return_full_atom ("abinitio:return_full_atom")
 
BooleanOptionKey const abinitio::detect_disulfide_before_relax ("abinitio:detect_disulfide_before_relax")
 
BooleanOptionKey const abinitio::close_loops ("abinitio:close_loops")
 
BooleanOptionKey const abinitio::bGDT ("abinitio:bGDT")
 
BooleanOptionKey const abinitio::dump_frags ("abinitio:dump_frags")
 
BooleanOptionKey const abinitio::jdist_rerun ("abinitio:jdist_rerun")
 
RealOptionKey const abinitio::perturb ("abinitio:perturb")
 
BooleanOptionKey const abinitio::rerun ("abinitio:rerun")
 
IntegerVectorOptionKey const abinitio::rmsd_residues ("abinitio:rmsd_residues")
 
BooleanOptionKey const abinitio::start_native ("abinitio:start_native")
 
BooleanOptionKey const abinitio::cyclic_peptide ("abinitio:cyclic_peptide")
 
BooleanOptionKey const abinitio::debug_structures ("abinitio:debug_structures")
 
FileOptionKey const abinitio::log_frags ("abinitio:log_frags")
 
BooleanOptionKey const abinitio::only_stage1 ("abinitio:only_stage1")
 
RealOptionKey const abinitio::end_bias ("abinitio:end_bias")
 
BooleanOptionKey const abinitio::apply_end_bias ("abinitio:apply_end_bias")
 
IntegerOptionKey const abinitio::symmetry_residue ("abinitio:symmetry_residue")
 
RealOptionKey const abinitio::vdw_weight_stage1 ("abinitio:vdw_weight_stage1")
 
BooleanOptionKey const abinitio::override_vdw_all_stages ("abinitio:override_vdw_all_stages")
 
IntegerVectorOptionKey const abinitio::recover_low_in_stages ("abinitio:recover_low_in_stages")
 
IntegerVectorOptionKey const abinitio::skip_stages ("abinitio:skip_stages")
 
BooleanOptionKey const abinitio::close_chbrk ("abinitio:close_chbrk")
 
BooleanOptionKey const abinitio::include_stage5 ("abinitio:include_stage5")
 
BooleanOptionKey const abinitio::close_loops_by_idealizing ("abinitio:close_loops_by_idealizing")
 
BooleanOptionKey const abinitio::optimize_cutpoints_using_kic ("abinitio:optimize_cutpoints_using_kic")
 
IntegerOptionKey const abinitio::optimize_cutpoints_margin ("abinitio:optimize_cutpoints_margin")
 
BooleanOptionKey const abinitio::star::star ("abinitio:star")
 
RealOptionKey const abinitio::star::initial_dist_cutoff ("abinitio:star:initial_dist_cutoff")
 
IntegerOptionKey const abinitio::star::min_unaligned_len ("abinitio:star:min_unaligned_len")
 
BooleanOptionKey const abrelax::abrelax ("abrelax")
 
BooleanOptionKey const abrelax::fail_unclosed ("abrelax:fail_unclosed")
 
BooleanOptionKey const AnchoredDesign::AnchoredDesign ("AnchoredDesign")
 
FileOptionKey const AnchoredDesign::anchor ("AnchoredDesign:anchor")
 
BooleanOptionKey const AnchoredDesign::allow_anchor_repack ("AnchoredDesign:allow_anchor_repack")
 
BooleanOptionKey const AnchoredDesign::vary_cutpoints ("AnchoredDesign:vary_cutpoints")
 
BooleanOptionKey const AnchoredDesign::no_frags ("AnchoredDesign:no_frags")
 
BooleanOptionKey const AnchoredDesign::debug ("AnchoredDesign:debug")
 
BooleanOptionKey const AnchoredDesign::show_extended ("AnchoredDesign:show_extended")
 
BooleanOptionKey const AnchoredDesign::refine_only ("AnchoredDesign:refine_only")
 
BooleanOptionKey const AnchoredDesign::perturb_show ("AnchoredDesign:perturb_show")
 
IntegerOptionKey const AnchoredDesign::perturb_cycles ("AnchoredDesign:perturb_cycles")
 
RealOptionKey const AnchoredDesign::perturb_temp ("AnchoredDesign:perturb_temp")
 
BooleanOptionKey const AnchoredDesign::perturb_CCD_off ("AnchoredDesign:perturb_CCD_off")
 
BooleanOptionKey const AnchoredDesign::perturb_KIC_off ("AnchoredDesign:perturb_KIC_off")
 
BooleanOptionKey const AnchoredDesign::refine_CCD_off ("AnchoredDesign:refine_CCD_off")
 
BooleanOptionKey const AnchoredDesign::refine_KIC_off ("AnchoredDesign:refine_KIC_off")
 
IntegerOptionKey const AnchoredDesign::refine_cycles ("AnchoredDesign:refine_cycles")
 
RealOptionKey const AnchoredDesign::refine_temp ("AnchoredDesign:refine_temp")
 
IntegerOptionKey const AnchoredDesign::refine_repack_cycles ("AnchoredDesign:refine_repack_cycles")
 
BooleanOptionKey const AnchoredDesign::rmsd ("AnchoredDesign:rmsd")
 
BooleanOptionKey const AnchoredDesign::unbound_mode ("AnchoredDesign:unbound_mode")
 
RealOptionKey const AnchoredDesign::chainbreak_weight ("AnchoredDesign:chainbreak_weight")
 
BooleanOptionKey const AnchoredDesign::filters::filters ("AnchoredDesign:filters")
 
RealOptionKey const AnchoredDesign::filters::score ("AnchoredDesign:filters:score")
 
RealOptionKey const AnchoredDesign::filters::sasa ("AnchoredDesign:filters:sasa")
 
BooleanOptionKey const AnchoredDesign::filters::omega ("AnchoredDesign:filters:omega")
 
BooleanOptionKey const AnchoredDesign::akash::akash ("AnchoredDesign:akash")
 
IntegerOptionKey const AnchoredDesign::akash::dyepos ("AnchoredDesign:akash:dyepos")
 
BooleanOptionKey const AnchoredDesign::testing::testing ("AnchoredDesign:testing")
 
RealOptionKey const AnchoredDesign::testing::VDW_weight ("AnchoredDesign:testing:VDW_weight")
 
BooleanOptionKey const AnchoredDesign::testing::anchor_via_constraints ("AnchoredDesign:testing:anchor_via_constraints")
 
BooleanOptionKey const AnchoredDesign::testing::delete_interface_native_sidechains ("AnchoredDesign:testing:delete_interface_native_sidechains")
 
FileOptionKey const AnchoredDesign::testing::RMSD_only_this ("AnchoredDesign:testing:RMSD_only_this")
 
BooleanOptionKey const AnchoredDesign::testing::anchor_noise_constraints_mode ("AnchoredDesign:testing:anchor_noise_constraints_mode")
 
BooleanOptionKey const AnchoredDesign::testing::super_secret_fixed_interface_mode ("AnchoredDesign:testing:super_secret_fixed_interface_mode")
 
BooleanOptionKey const AnchoredDesign::testing::randomize_input_sequence ("AnchoredDesign:testing:randomize_input_sequence")
 
BooleanOptionKey const simple_metrics::simple_metrics ("simple_metrics")
 
BooleanOptionKey const simple_metrics::use_name_as_custom_type ("simple_metrics:use_name_as_custom_type")
 
BooleanOptionKey const simple_metrics::use_name_as_metric ("simple_metrics:use_name_as_metric")
 
BooleanOptionKey const antibody::antibody ("antibody")
 
StringOptionKey const antibody::input_ab_scheme ("antibody:input_ab_scheme")
 
StringOptionKey const antibody::output_ab_scheme ("antibody:output_ab_scheme")
 
StringOptionKey const antibody::cdr_definition ("antibody:cdr_definition")
 
StringOptionKey const antibody::light_chain ("antibody:light_chain")
 
BooleanOptionKey const antibody::check_cdr_chainbreaks ("antibody:check_cdr_chainbreaks")
 
BooleanOptionKey const antibody::check_cdr_pep_bond_geom ("antibody:check_cdr_pep_bond_geom")
 
BooleanOptionKey const antibody::constrain_cter ("antibody:constrain_cter")
 
BooleanOptionKey const antibody::auto_generate_kink_constraint ("antibody:auto_generate_kink_constraint")
 
BooleanOptionKey const antibody::all_atom_mode_kink_constraint ("antibody:all_atom_mode_kink_constraint")
 
StringOptionKey const antibody::numbering_scheme ("antibody:numbering_scheme")
 
BooleanOptionKey const antibody::graft_l1 ("antibody:graft_l1")
 
StringOptionKey const antibody::l1_template ("antibody:l1_template")
 
BooleanOptionKey const antibody::graft_l2 ("antibody:graft_l2")
 
StringOptionKey const antibody::l2_template ("antibody:l2_template")
 
BooleanOptionKey const antibody::graft_l3 ("antibody:graft_l3")
 
StringOptionKey const antibody::l3_template ("antibody:l3_template")
 
BooleanOptionKey const antibody::graft_h1 ("antibody:graft_h1")
 
StringOptionKey const antibody::h1_template ("antibody:h1_template")
 
BooleanOptionKey const antibody::graft_h2 ("antibody:graft_h2")
 
StringOptionKey const antibody::h2_template ("antibody:h2_template")
 
BooleanOptionKey const antibody::graft_h3 ("antibody:graft_h3")
 
StringOptionKey const antibody::h3_template ("antibody:h3_template")
 
StringOptionKey const antibody::light_heavy_template ("antibody:light_heavy_template")
 
StringOptionKey const antibody::frl_template ("antibody:frl_template")
 
StringOptionKey const antibody::frh_template ("antibody:frh_template")
 
BooleanOptionKey const antibody::run_snugdock ("antibody:run_snugdock")
 
BooleanOptionKey const antibody::h3_no_stem_graft ("antibody:h3_no_stem_graft")
 
BooleanOptionKey const antibody::packonly_after_graft ("antibody:packonly_after_graft")
 
BooleanOptionKey const antibody::stem_optimize ("antibody:stem_optimize")
 
IntegerOptionKey const antibody::stem_optimize_size ("antibody:stem_optimize_size")
 
StringOptionKey const antibody::preprocessing_script_version ("antibody:preprocessing_script_version")
 
BooleanOptionKey const antibody::model_h3 ("antibody:model_h3")
 
BooleanOptionKey const antibody::snugfit ("antibody:snugfit")
 
BooleanOptionKey const antibody::refine_h3 ("antibody:refine_h3")
 
BooleanOptionKey const antibody::h3_filter ("antibody:h3_filter")
 
RealOptionKey const antibody::h3_filter_tolerance ("antibody:h3_filter_tolerance")
 
BooleanOptionKey const antibody::sc_min ("antibody:sc_min")
 
BooleanOptionKey const antibody::rt_min ("antibody:rt_min")
 
BooleanOptionKey const antibody::extend_h3_before_modeling ("antibody:extend_h3_before_modeling")
 
StringOptionKey const antibody::centroid_refine ("antibody:centroid_refine")
 
BooleanOptionKey const antibody::h3_loop_csts_lr ("antibody:h3_loop_csts_lr")
 
BooleanOptionKey const antibody::h3_loop_csts_hr ("antibody:h3_loop_csts_hr")
 
BooleanOptionKey const antibody::auto_generate_h3_kink_constraint ("antibody:auto_generate_h3_kink_constraint")
 
BooleanOptionKey const antibody::constrain_vlvh_qq ("antibody:constrain_vlvh_qq")
 
BooleanOptionKey const antibody::snug_loops ("antibody:snug_loops")
 
FileOptionKey const antibody::input_fv ("antibody:input_fv")
 
BooleanOptionKey const antibody::camelid ("antibody:camelid")
 
BooleanOptionKey const antibody::camelid_constraints ("antibody:camelid_constraints")
 
BooleanOptionKey const antibody::use_mean_cluster_cst_data ("antibody:use_mean_cluster_cst_data")
 
BooleanOptionKey const antibody::force_use_of_cluster_csts_with_outliers ("antibody:force_use_of_cluster_csts_with_outliers")
 
IntegerOptionKey const antibody::cluster_csts_stats_cutoff ("antibody:cluster_csts_stats_cutoff")
 
RealOptionKey const antibody::general_dihedral_cst_phi_sd ("antibody:general_dihedral_cst_phi_sd")
 
RealOptionKey const antibody::general_dihedral_cst_psi_sd ("antibody:general_dihedral_cst_psi_sd")
 
BooleanOptionKey const antibody::allow_omega_mismatches_for_north_clusters ("antibody:allow_omega_mismatches_for_north_clusters")
 
StringOptionKey const antibody::prefix ("antibody:prefix")
 
StringOptionKey const antibody::grafting_database ("antibody:grafting_database")
 
StringOptionKey const antibody::blastp ("antibody:blastp")
 
StringVectorOptionKey const antibody::exclude_pdbs ("antibody:exclude_pdbs")
 
BooleanOptionKey const antibody::exclude_homologs ("antibody:exclude_homologs")
 
RealOptionKey const antibody::exclude_homologs_cdr_cutoff ("antibody:exclude_homologs_cdr_cutoff")
 
RealOptionKey const antibody::exclude_homologs_fr_cutoff ("antibody:exclude_homologs_fr_cutoff")
 
RealOptionKey const antibody::ocd_cutoff ("antibody:ocd_cutoff")
 
RealOptionKey const antibody::bfactor_cutoff ("antibody:bfactor_cutoff")
 
IntegerOptionKey const antibody::n_multi_templates ("antibody:n_multi_templates")
 
StringOptionKey const antibody::json_cdr ("antibody:json_cdr")
 
BooleanOptionKey const antibody::design::design ("antibody:design")
 
BooleanOptionKey const antibody::design::view ("antibody:design:view")
 
StringOptionKey const antibody::design::base_cdr_instructions ("antibody:design:base_cdr_instructions")
 
StringOptionKey const antibody::design::cdr_instructions ("antibody:design:cdr_instructions")
 
StringOptionKey const antibody::design::antibody_database ("antibody:design:antibody_database")
 
BooleanOptionKey const antibody::design::paper_ab_db ("antibody:design:paper_ab_db")
 
StringOptionKey const antibody::design::paper_ab_db_path ("antibody:design:paper_ab_db_path")
 
StringVectorOptionKey const antibody::design::seq_design_cdrs ("antibody:design:seq_design_cdrs")
 
StringVectorOptionKey const antibody::design::graft_design_cdrs ("antibody:design:graft_design_cdrs")
 
StringVectorOptionKey const antibody::design::primary_cdrs ("antibody:design:primary_cdrs")
 
StringOptionKey const antibody::design::mintype ("antibody:design:mintype")
 
StringVectorOptionKey const antibody::design::disallow_aa ("antibody:design:disallow_aa")
 
IntegerOptionKey const antibody::design::top_designs ("antibody:design:top_designs")
 
BooleanOptionKey const antibody::design::high_mem_mode ("antibody:design:high_mem_mode")
 
IntegerOptionKey const antibody::design::cdr_set_cache_limit ("antibody:design:cdr_set_cache_limit")
 
StringOptionKey const antibody::design::design_protocol ("antibody:design:design_protocol")
 
BooleanOptionKey const antibody::design::run_relax ("antibody:design:run_relax")
 
BooleanOptionKey const antibody::design::run_interface_analyzer ("antibody:design:run_interface_analyzer")
 
StringVectorOptionKey const antibody::design::paratope ("antibody:design:paratope")
 
StringVectorOptionKey const antibody::design::epitope ("antibody:design:epitope")
 
BooleanOptionKey const antibody::design::use_epitope_constraints ("antibody:design:use_epitope_constraints")
 
RealOptionKey const antibody::design::dihedral_cst_weight ("antibody:design:dihedral_cst_weight")
 
RealOptionKey const antibody::design::atom_pair_cst_weight ("antibody:design:atom_pair_cst_weight")
 
BooleanOptionKey const antibody::design::global_dihedral_cst_scoring ("antibody:design:global_dihedral_cst_scoring")
 
BooleanOptionKey const antibody::design::global_atom_pair_cst_scoring ("antibody:design:global_atom_pair_cst_scoring")
 
BooleanOptionKey const antibody::design::do_dock ("antibody:design:do_dock")
 
IntegerOptionKey const antibody::design::dock_first_cycles ("antibody:design:dock_first_cycles")
 
IntegerOptionKey const antibody::design::dock_second_cycles ("antibody:design:dock_second_cycles")
 
IntegerOptionKey const antibody::design::outer_cycle_rounds ("antibody:design:outer_cycle_rounds")
 
IntegerOptionKey const antibody::design::inner_cycle_rounds ("antibody:design:inner_cycle_rounds")
 
IntegerOptionKey const antibody::design::dock_cycle_rounds ("antibody:design:dock_cycle_rounds")
 
IntegerOptionKey const antibody::design::relax_cycle_rounds ("antibody:design:relax_cycle_rounds")
 
RealOptionKey const antibody::design::interface_dis ("antibody:design:interface_dis")
 
RealOptionKey const antibody::design::neighbor_dis ("antibody:design:neighbor_dis")
 
BooleanOptionKey const antibody::design::use_outliers ("antibody:design:use_outliers")
 
BooleanOptionKey const antibody::design::use_H3_graft_outliers ("antibody:design:use_H3_graft_outliers")
 
BooleanOptionKey const antibody::design::use_only_H3_kinked ("antibody:design:use_only_H3_kinked")
 
BooleanOptionKey const antibody::design::design_antigen ("antibody:design:design_antigen")
 
BooleanOptionKey const antibody::design::design_framework ("antibody:design:design_framework")
 
BooleanOptionKey const antibody::design::conservative_framework_design ("antibody:design:conservative_framework_design")
 
BooleanOptionKey const antibody::design::design_H3_stem ("antibody:design:design_H3_stem")
 
BooleanOptionKey const antibody::design::design_proline ("antibody:design:design_proline")
 
RealOptionKey const antibody::design::sample_zero_probs_at ("antibody:design:sample_zero_probs_at")
 
BooleanOptionKey const antibody::design::force_mutate_framework_for_cluster ("antibody:design:force_mutate_framework_for_cluster")
 
BooleanOptionKey const antibody::design::no_profile_probabilities ("antibody:design:no_profile_probabilities")
 
IntegerOptionKey const antibody::design::seq_design_stats_cutoff ("antibody:design:seq_design_stats_cutoff")
 
IntegerOptionKey const antibody::design::seq_design_profile_samples ("antibody:design:seq_design_profile_samples")
 
BooleanOptionKey const antibody::design::idealize_graft_cdrs ("antibody:design:idealize_graft_cdrs")
 
StringVectorOptionKey const antibody::design::add_backrub_pivots ("antibody:design:add_backrub_pivots")
 
RealOptionKey const antibody::design::inner_kt ("antibody:design:inner_kt")
 
RealOptionKey const antibody::design::outer_kt ("antibody:design:outer_kt")
 
BooleanOptionKey const antibody::design::random_start ("antibody:design:random_start")
 
BooleanOptionKey const antibody::design::adapt_graft ("antibody:design:adapt_graft")
 
BooleanOptionKey const antibody::design::enable_adapt_graft_cartesian ("antibody:design:enable_adapt_graft_cartesian")
 
BooleanOptionKey const antibody::design::remove_antigen ("antibody:design:remove_antigen")
 
BooleanOptionKey const antibody::design::add_graft_log_to_pdb ("antibody:design:add_graft_log_to_pdb")
 
BooleanOptionKey const antibody::design::mutate_framework_for_cluster ("antibody:design:mutate_framework_for_cluster")
 
BooleanOptionKey const task_operations::task_operations ("task_operations")
 
StringOptionKey const task_operations::cons_design_data_source ("task_operations:cons_design_data_source")
 
BooleanOptionKey const assembly::assembly ("assembly")
 
FileOptionKey const assembly::pdb1 ("assembly:pdb1")
 
FileOptionKey const assembly::pdb2 ("assembly:pdb2")
 
BooleanOptionKey const backrub::backrub ("backrub")
 
IntegerVectorOptionKey const backrub::pivot_residues ("backrub:pivot_residues")
 
StringVectorOptionKey const backrub::pivot_atoms ("backrub:pivot_atoms")
 
IntegerOptionKey const backrub::min_atoms ("backrub:min_atoms")
 
IntegerOptionKey const backrub::max_atoms ("backrub:max_atoms")
 
IntegerOptionKey const backrub::ntrials ("backrub:ntrials")
 
RealOptionKey const backrub::sc_prob ("backrub:sc_prob")
 
RealOptionKey const backrub::sm_prob ("backrub:sm_prob")
 
RealOptionKey const backrub::sc_prob_uniform ("backrub:sc_prob_uniform")
 
RealOptionKey const backrub::sc_prob_withinrot ("backrub:sc_prob_withinrot")
 
RealOptionKey const backrub::mc_kt ("backrub:mc_kt")
 
RealOptionKey const backrub::mm_bend_weight ("backrub:mm_bend_weight")
 
BooleanOptionKey const backrub::initial_pack ("backrub:initial_pack")
 
FileOptionKey const backrub::minimize_movemap ("backrub:minimize_movemap")
 
BooleanOptionKey const backrub::trajectory ("backrub:trajectory")
 
BooleanOptionKey const backrub::trajectory_gz ("backrub:trajectory_gz")
 
IntegerOptionKey const backrub::trajectory_stride ("backrub:trajectory_stride")
 
BooleanOptionKey const batch_relax::batch_relax ("batch_relax")
 
IntegerOptionKey const batch_relax::batch_size ("batch_relax:batch_size")
 
BooleanOptionKey const bbg::bbg ("bbg")
 
RealOptionKey const bbg::factorA ("bbg:factorA")
 
RealOptionKey const bbg::factorB ("bbg:factorB")
 
BooleanOptionKey const bbg::ignore_improper_res ("bbg:ignore_improper_res")
 
BooleanOptionKey const bbg::fix_short_segment ("bbg:fix_short_segment")
 
BooleanOptionKey const boinc::boinc ("boinc")
 
BooleanOptionKey const boinc::graphics ("boinc:graphics")
 
BooleanOptionKey const boinc::fullscreen ("boinc:fullscreen")
 
IntegerOptionKey const boinc::max_fps ("boinc:max_fps")
 
IntegerOptionKey const boinc::max_cpu ("boinc:max_cpu")
 
BooleanOptionKey const boinc::noshmem ("boinc:noshmem")
 
IntegerOptionKey const boinc::cpu_run_time ("boinc:cpu_run_time")
 
IntegerOptionKey const boinc::max_nstruct ("boinc:max_nstruct")
 
RealOptionKey const boinc::cpu_frac ("boinc:cpu_frac")
 
RealOptionKey const boinc::frame_rate ("boinc:frame_rate")
 
BooleanOptionKey const boinc::watchdog ("boinc:watchdog")
 
IntegerOptionKey const boinc::watchdog_time ("boinc:watchdog_time")
 
IntegerOptionKey const boinc::cpu_run_timeout ("boinc:cpu_run_timeout")
 
FileOptionKey const boinc::description_file ("boinc:description_file")
 
RealOptionKey const boinc::score_cut_pct ("boinc:score_cut_pct")
 
FileOptionKey const boinc::score_cut_fl ("boinc:score_cut_fl")
 
BooleanOptionKey const boinc::score_cut_smart_throttle ("boinc:score_cut_smart_throttle")
 
BooleanOptionKey const broker::broker ("broker")
 
FileVectorOptionKey const broker::setup ("broker:setup")
 
RealOptionKey const broker::rb_mover_stage1_weight ("broker:rb_mover_stage1_weight")
 
RealOptionKey const broker::large_frag_mover_stage1_weight ("broker:large_frag_mover_stage1_weight")
 
RealOptionKey const broker::small_frag_mover_stage1_weight ("broker:small_frag_mover_stage1_weight")
 
BooleanOptionKey const bunsat_calc2::bunsat_calc2 ("bunsat_calc2")
 
RealOptionKey const bunsat_calc2::sasa_burial_cutoff ("bunsat_calc2:sasa_burial_cutoff")
 
BooleanOptionKey const bunsat_calc2::layered_sasa ("bunsat_calc2:layered_sasa")
 
BooleanOptionKey const bunsat_calc2::generous_hbonds ("bunsat_calc2:generous_hbonds")
 
RealOptionKey const bunsat_calc2::AHD_cutoff ("bunsat_calc2:AHD_cutoff")
 
RealOptionKey const bunsat_calc2::dist_cutoff ("bunsat_calc2:dist_cutoff")
 
RealOptionKey const bunsat_calc2::hxl_dist_cutoff ("bunsat_calc2:hxl_dist_cutoff")
 
RealOptionKey const bunsat_calc2::sulph_dist_cutoff ("bunsat_calc2:sulph_dist_cutoff")
 
RealOptionKey const bunsat_calc2::metal_dist_cutoff ("bunsat_calc2:metal_dist_cutoff")
 
BooleanOptionKey const canonical_sampling::canonical_sampling ("canonical_sampling")
 
BooleanOptionKey const canonical_sampling::probabilities::probabilities ("canonical_sampling:probabilities")
 
RealOptionKey const canonical_sampling::probabilities::sc ("canonical_sampling:probabilities:sc")
 
RealOptionKey const canonical_sampling::probabilities::localbb ("canonical_sampling:probabilities:localbb")
 
RealOptionKey const canonical_sampling::probabilities::sc_prob_uniform ("canonical_sampling:probabilities:sc_prob_uniform")