Rosetta  2020.37
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Variables
basic::options::OptionKeys::tcrmodel Namespace Reference

Variables

BooleanOptionKey const tcrmodel
 
FileOptionKey const ignore_list
 
RealOptionKey const blastp_identity_cutoff
 
RealOptionKey const template_identity_cutoff
 
BooleanOptionKey const include_ab_templates
 
BooleanOptionKey const dump_templates
 
BooleanOptionKey const skip_modeling
 
StringOptionKey const ab_template_db_path
 
StringOptionKey const tcr_template_db_path
 
BooleanOptionKey const minimize_model
 
BooleanOptionKey const relax_model
 
BooleanOptionKey const remodel_loop_cdr3a
 
BooleanOptionKey const remodel_loop_cdr3b
 
BooleanOptionKey const remodel_tcr_cdr3a_loop
 
BooleanOptionKey const remodel_tcr_cdr3b_loop
 
BooleanOptionKey const refine_tcr_cdr3a_loop
 
BooleanOptionKey const refine_tcr_cdr3b_loop
 
BooleanOptionKey const remodel_tcr_cdr3_loops
 
BooleanOptionKey const refine_tcr_cdr3_loops
 
BooleanOptionKey const refine_all_tcr_cdr_loops
 
BooleanOptionKey const use_user_templates
 
StringOptionKey const alpha_framework_template_id
 
StringOptionKey const beta_framework_template_id
 
StringOptionKey const alpha_germline_template_id
 
StringOptionKey const beta_germline_template_id
 
StringOptionKey const alpha_cdr1_template_id
 
StringOptionKey const beta_cdr1_template_id
 
StringOptionKey const alpha_cdr2_template_id
 
StringOptionKey const beta_cdr2_template_id
 
StringOptionKey const alpha_cdr3_template_id
 
StringOptionKey const beta_cdr3_template_id
 
StringOptionKey const alpha_orientation_template_id
 
StringOptionKey const beta_orientation_template_id
 
StringOptionKey const alpha_framework_template_pdb
 
StringOptionKey const beta_framework_template_pdb
 
StringOptionKey const alpha_germline_template_pdb
 
StringOptionKey const beta_germline_template_pdb
 
StringOptionKey const alpha_cdr1_template_pdb
 
StringOptionKey const beta_cdr1_template_pdb
 
StringOptionKey const alpha_cdr2_template_pdb
 
StringOptionKey const beta_cdr2_template_pdb
 
StringOptionKey const alpha_cdr3_template_pdb
 
StringOptionKey const beta_cdr3_template_pdb
 
StringOptionKey const alpha_orientation_template_pdb
 
StringOptionKey const beta_orientation_template_pdb
 
BooleanOptionKey const use_alpha_germline_templates
 
BooleanOptionKey const use_beta_germline_templates
 
BooleanOptionKey const assign_cdr
 
StringOptionKey const assign_cdr1a
 
StringOptionKey const assign_cdr2a
 
StringOptionKey const assign_cdr3a
 
StringOptionKey const assign_cdr1b
 
StringOptionKey const assign_cdr2b
 
StringOptionKey const assign_cdr3b
 
StringOptionKey const anarci_path
 

Variable Documentation

StringOptionKey const basic::options::OptionKeys::tcrmodel::ab_template_db_path

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr1_template_id

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr1_template_pdb

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr2_template_id

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr2_template_pdb

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr3_template_id

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr3_template_pdb

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_framework_template_id

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_framework_template_pdb

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_germline_template_id

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_germline_template_pdb

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_orientation_template_id

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_orientation_template_pdb

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::anarci_path

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr1a

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr1b

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr2a

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr2b

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr3a

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr3b

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr1_template_id

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr1_template_pdb

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr2_template_id

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr2_template_pdb

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr3_template_id

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr3_template_pdb

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_framework_template_id

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_framework_template_pdb

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_germline_template_id

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_germline_template_pdb

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_orientation_template_id

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_orientation_template_pdb

Referenced by add_rosetta_options_15().

RealOptionKey const basic::options::OptionKeys::tcrmodel::blastp_identity_cutoff

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::dump_templates

Referenced by add_rosetta_options_15().

FileOptionKey const basic::options::OptionKeys::tcrmodel::ignore_list

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::include_ab_templates

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::minimize_model

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::refine_all_tcr_cdr_loops

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::refine_tcr_cdr3_loops

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::refine_tcr_cdr3a_loop

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::refine_tcr_cdr3b_loop

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::relax_model

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::remodel_loop_cdr3a

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::remodel_loop_cdr3b

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::remodel_tcr_cdr3_loops

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::remodel_tcr_cdr3a_loop

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::remodel_tcr_cdr3b_loop

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::skip_modeling

Referenced by add_rosetta_options_15().

StringOptionKey const basic::options::OptionKeys::tcrmodel::tcr_template_db_path

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::tcrmodel

Referenced by add_rosetta_options_15().

RealOptionKey const basic::options::OptionKeys::tcrmodel::template_identity_cutoff

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::use_alpha_germline_templates

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::use_beta_germline_templates

Referenced by add_rosetta_options_15().

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::use_user_templates

Referenced by add_rosetta_options_15().