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optE.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces

 basic
 Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
 
 basic::options
 
 basic::options::OptionKeys
 
 basic::options::OptionKeys::optE
 
 basic::options::OptionKeys::optE::rescore
 

Variables

BooleanOptionKey const basic::options::OptionKeys::optE::optE
 
StringOptionKey const basic::options::OptionKeys::optE::load_from_silent
 
StringOptionKey const basic::options::OptionKeys::optE::data_in
 
StringOptionKey const basic::options::OptionKeys::optE::data_out
 
StringOptionKey const basic::options::OptionKeys::optE::weights
 
StringVectorOptionKey const basic::options::OptionKeys::optE::fix
 
FileOptionKey const basic::options::OptionKeys::optE::free
 
FileOptionKey const basic::options::OptionKeys::optE::fixed
 
FileOptionKey const basic::options::OptionKeys::optE::parse_tagfile
 
FileOptionKey const basic::options::OptionKeys::optE::constant_logic_taskops_file
 
BooleanOptionKey const basic::options::OptionKeys::optE::optE_soft_rep
 
BooleanOptionKey const basic::options::OptionKeys::optE::no_hb_env_dependence
 
BooleanOptionKey const basic::options::OptionKeys::optE::no_hb_env_dependence_DNA
 
BooleanOptionKey const basic::options::OptionKeys::optE::optE_no_protein_fa_elec
 
BooleanOptionKey const basic::options::OptionKeys::optE::include_intra_res_protein
 
BooleanOptionKey const basic::options::OptionKeys::optE::centroid_rot
 
BooleanOptionKey const basic::options::OptionKeys::optE::centroid_rot_min
 
BooleanOptionKey const basic::options::OptionKeys::optE::design_first
 
IntegerOptionKey const basic::options::OptionKeys::optE::n_design_cycles
 
BooleanOptionKey const basic::options::OptionKeys::optE::recover_nat_rot
 
FileOptionKey const basic::options::OptionKeys::optE::component_weights
 
BooleanOptionKey const basic::options::OptionKeys::optE::optimize_nat_aa
 
BooleanOptionKey const basic::options::OptionKeys::optE::optimize_nat_rot
 
FileOptionKey const basic::options::OptionKeys::optE::optimize_ligand_rot
 
BooleanOptionKey const basic::options::OptionKeys::optE::optimize_pssm
 
FileOptionKey const basic::options::OptionKeys::optE::optimize_dGbinding
 
FileOptionKey const basic::options::OptionKeys::optE::optimize_ddG_bind_correlation
 
FileOptionKey const basic::options::OptionKeys::optE::optimize_ddGmutation
 
BooleanOptionKey const basic::options::OptionKeys::optE::optimize_ddGmutation_straight_mean
 
BooleanOptionKey const basic::options::OptionKeys::optE::optimize_ddGmutation_boltzman_average
 
RealOptionKey const basic::options::OptionKeys::optE::exclude_badrep_ddGs
 
BooleanOptionKey const basic::options::OptionKeys::optE::pretend_no_ddG_repulsion
 
FileOptionKey const basic::options::OptionKeys::optE::optimize_decoy_discrimination
 
StringOptionKey const basic::options::OptionKeys::optE::normalize_decoy_score_spread
 
BooleanOptionKey const basic::options::OptionKeys::optE::ramp_nativeness
 
IntegerOptionKey const basic::options::OptionKeys::optE::n_top_natives_to_optimize
 
RealOptionKey const basic::options::OptionKeys::optE::approximate_decoy_entropy
 
BooleanOptionKey const basic::options::OptionKeys::optE::repack_and_minimize_decoys
 
BooleanOptionKey const basic::options::OptionKeys::optE::repack_and_minimize_input_structures
 
IntegerOptionKey const basic::options::OptionKeys::optE::output_top_n_new_decoys
 
FileOptionKey const basic::options::OptionKeys::optE::optimize_ligand_discrimination
 
BooleanOptionKey const basic::options::OptionKeys::optE::no_design
 
BooleanOptionKey const basic::options::OptionKeys::optE::sqrt_pssm
 
RealOptionKey const basic::options::OptionKeys::optE::min_decoy_rms_to_native
 
RealOptionKey const basic::options::OptionKeys::optE::max_rms_from_native
 
BooleanOptionKey const basic::options::OptionKeys::optE::optimize_starting_free_weights
 
FileOptionKey const basic::options::OptionKeys::optE::wrap_dof_optimization
 
RealOptionKey const basic::options::OptionKeys::optE::randomly_perturb_starting_free_weights
 
RealOptionKey const basic::options::OptionKeys::optE::inv_kT_natrot
 
RealOptionKey const basic::options::OptionKeys::optE::inv_kT_nataa
 
RealOptionKey const basic::options::OptionKeys::optE::inv_kT_natstruct
 
BooleanOptionKey const basic::options::OptionKeys::optE::mpi_weight_minimization
 
BooleanOptionKey const basic::options::OptionKeys::optE::dont_use_reference_energies
 
IntegerOptionKey const basic::options::OptionKeys::optE::number_of_swarm_particles
 
IntegerOptionKey const basic::options::OptionKeys::optE::number_of_swarm_cycles
 
FileOptionKey const basic::options::OptionKeys::optE::constrain_weights
 
BooleanOptionKey const basic::options::OptionKeys::optE::fit_reference_energies_to_aa_profile_recovery
 
FileOptionKey const basic::options::OptionKeys::optE::starting_refEs
 
BooleanOptionKey const basic::options::OptionKeys::optE::repeat_swarm_optimization_until_fitness_improves
 
BooleanOptionKey const basic::options::OptionKeys::optE::design_with_minpack
 
BooleanOptionKey const basic::options::OptionKeys::optE::design_with_fast_design
 
BooleanOptionKey const basic::options::OptionKeys::optE::design_with_offrotpack
 
BooleanOptionKey const basic::options::OptionKeys::optE::limit_bad_scores
 
BooleanOptionKey const basic::options::OptionKeys::optE::no_design_pdb_output
 
BooleanOptionKey const basic::options::OptionKeys::optE::rescore::rescore
 
FileOptionKey const basic::options::OptionKeys::optE::rescore::weights
 
IntegerOptionKey const basic::options::OptionKeys::optE::rescore::context_round
 
FileOptionKey const basic::options::OptionKeys::optE::rescore::outlog
 
BooleanOptionKey const basic::options::OptionKeys::optE::rescore::measure_sequence_recovery
 

Detailed Description

basic::options::OptionKeys collection

Author
Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)
James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)