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Rosetta
2020.50
|
Namespaces | |
fiber_diffraction | |
loop_close | |
occ_sol_fitted | |
rna | |
saxs | |
StringVectorOptionKey const basic::options::OptionKeys::score::aa_composition_setup_file |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::aa_repeat_energy_penalty_file |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::alignment_sharpness |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::analytic_etable_evaluation |
Referenced by add_rosetta_options_1(), and HDmakerMover::bb_score().
BooleanOptionKey const basic::options::OptionKeys::score::approximate_buried_unsat_penalty_assume_const_backbone |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::approximate_buried_unsat_penalty_burial_atomic_depth |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::approximate_buried_unsat_penalty_burial_probe_radius |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::approximate_buried_unsat_penalty_burial_resolution |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::approximate_buried_unsat_penalty_hbond_bonus_cross_chain |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::approximate_buried_unsat_penalty_hbond_bonus_ser_to_helix_bb |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::approximate_buried_unsat_penalty_hbond_energy_threshold |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::approximate_buried_unsat_penalty_natural_corrections1 |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::approximate_buried_unsat_penalty_oversat_penalty |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::arg_cation_pi_his_can_be_pi |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::aspartimide_penalty_value |
Referenced by add_rosetta_options_1().
RealVectorOptionKey const basic::options::OptionKeys::score::bonded_params |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::bonded_params_dir |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::buried_unsatisfied_penalty_burial_threshold |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::buried_unsatisfied_penalty_cone_angle_exponent |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::buried_unsatisfied_penalty_cone_angle_shift_factor |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::buried_unsatisfied_penalty_cone_dist_exponent |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::buried_unsatisfied_penalty_cone_dist_midpoint |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::buried_unsatisfied_penalty_hbond_energy_threshold |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::cart_bonded_skip_cutpoints |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::compute_mg_sol_for_hydrogens |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::conc |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::count_pair_full |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::count_pair_hybrid |
Referenced by add_rosetta_options_1().
FileOptionKey const basic::options::OptionKeys::score::covalent_labeling_fa_input |
Referenced by add_rosetta_options_1().
FileOptionKey const basic::options::OptionKeys::score::covalent_labeling_input |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::custom_atom_pair |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::disulf_matching_probe |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::docking_interface_score |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::elec_context_maxburial |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::elec_context_minburial |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::elec_context_minstrength |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::elec_die |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::elec_group_extrafile |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::elec_group_file |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::elec_max_dis |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::elec_min_dis |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::elec_r_option |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::elec_representative_cp |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::elec_representative_cp_flip |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::elec_sigmoidal_die |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::elec_sigmoidal_die_D |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::elec_sigmoidal_die_D0 |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::elec_sigmoidal_die_S |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::empty |
Referenced by pyrosetta.distributed.cluster.io.IO::_parse_results(), numeric::expression_parser::LiteralExpression::active_variables(), add_rosetta_options_1(), basic::resource_manager::ResourceManager::deallocate_resource(), ObjexxFCL::ObserverMulti::do_has_observer(), erraser2_test(), UBQ_GTPase_disulfide_Mover::init_on_new_input(), UBQ_E2Mover::init_on_new_input(), main(), utility::SimulateMPIData::pop_next_message_for_node_of_type(), utility::SimulateMPIData::pop_next_message_of_type(), utility::SimulateMPIData::retrieve_next_message(), utility::split_by_newlines(), utility::vectorL< L, bool, A >::u(), utility::vectorL< 1, std::string, A >::u(), and binder::vector_binder< T, Allocator >::vector_binder().
BooleanOptionKey const basic::options::OptionKeys::score::envsmooth_zero_negatives |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::eval_intrares_elec_ST_only |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::exact_occ_pairwise |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::exact_occ_pairwise_by_res |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::exact_occ_radius_scaling |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::exact_occ_self_res_no_occ |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::exact_occ_skip_Hbonders |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::exact_occ_split_between_res |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::extra_improper_file |
Referenced by add_rosetta_options_1().
StringVectorOptionKey const basic::options::OptionKeys::score::extra_mm_params_dir |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::fa_custom_pair_distance_file |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::fa_Hatr |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::fa_max_dis |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::fa_stack_base_base_only |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::fa_stack_include_rna_protein |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::fa_stack_lr_dist_cutoff |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::fa_stack_lr_prefactor |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::fa_stack_lr_stack_cutoff |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::fa_stack_sol_dist_cutoff |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::fa_stack_sol_prefactor |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::fa_stack_sol_stack_cutoff |
Referenced by add_rosetta_options_1().
RealVectorOptionKey const basic::options::OptionKeys::score::facts_adjbb_elec_scale |
Referenced by add_rosetta_options_2().
RealVectorOptionKey const basic::options::OptionKeys::score::facts_adjbb_solv_scale |
Referenced by add_rosetta_options_2().
RealVectorOptionKey const basic::options::OptionKeys::score::facts_adjbs_elec_scale |
Referenced by add_rosetta_options_2().
RealVectorOptionKey const basic::options::OptionKeys::score::facts_adjbs_solv_scale |
Referenced by add_rosetta_options_2().
IntegerOptionKey const basic::options::OptionKeys::score::facts_asp_patch |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::facts_binding_affinity |
Referenced by add_rosetta_options_2().
StringOptionKey const basic::options::OptionKeys::score::facts_charge_dir |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::facts_die |
Referenced by add_rosetta_options_2().
RealVectorOptionKey const basic::options::OptionKeys::score::facts_dshift |
Referenced by add_rosetta_options_2().
StringOptionKey const basic::options::OptionKeys::score::facts_eff_charge_dir |
Referenced by add_rosetta_options_2().
StringOptionKey const basic::options::OptionKeys::score::facts_eq_type |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::facts_GBpair_cut |
Referenced by add_rosetta_options_2().
RealVectorOptionKey const basic::options::OptionKeys::score::facts_intbb_elec_scale |
Referenced by add_rosetta_options_2().
RealVectorOptionKey const basic::options::OptionKeys::score::facts_intbb_solv_scale |
Referenced by add_rosetta_options_2().
RealVectorOptionKey const basic::options::OptionKeys::score::facts_intbs_elec_scale |
Referenced by add_rosetta_options_2().
RealVectorOptionKey const basic::options::OptionKeys::score::facts_intbs_solv_scale |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::facts_intrascale_by_level |
Referenced by add_rosetta_options_2().
RealVectorOptionKey const basic::options::OptionKeys::score::facts_intsc_elec_scale |
Referenced by add_rosetta_options_2().
RealVectorOptionKey const basic::options::OptionKeys::score::facts_intsc_solv_scale |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::facts_kappa |
Referenced by add_rosetta_options_2().
StringVectorOptionKey const basic::options::OptionKeys::score::facts_plane_aa |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::facts_plane_to_self |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::facts_saltbridge_correction |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::find_neighbors_3dgrid |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::find_neighbors_stripehash |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::force_sugar_bb_zero |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::free_side_chain_bonus |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::gen_bonded_exclude_def_file |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::gen_bonded_params_file |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::genbonded_score_full |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::genbonded_score_hybrid |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::score::geom_sol_interres_path_distance_cutoff |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::score::geom_sol_intrares_path_distance_cutoff |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::grp_cpfxn |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::grpelec_context_dependent |
Referenced by add_rosetta_options_1().
RealVectorOptionKey const basic::options::OptionKeys::score::grpelec_cpfxn_weight |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::grpelec_fade_hbond |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::grpelec_fade_param1 |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::grpelec_fade_param2 |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::grpelec_fade_type |
Referenced by add_rosetta_options_1().
RealVectorOptionKey const basic::options::OptionKeys::score::grpelec_max_qeps |
Referenced by add_rosetta_options_1().
StringVectorOptionKey const basic::options::OptionKeys::score::hb_acc_strength |
Referenced by add_rosetta_options_1().
StringVectorOptionKey const basic::options::OptionKeys::score::hb_don_strength |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::hb_max_energy |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::hbe_for_dH2O_aGEN_SP3SC_ssother |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::hbnet_bonus_function_ramping |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::score::hbnet_max_network_size |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::hbond_bb_per_residue_energy |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::hbond_disable_bbsc_exclusion_rule |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::hbond_fade |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::hbond_new_sp3_acc |
Referenced by add_rosetta_options_2().
StringOptionKey const basic::options::OptionKeys::score::hbond_params |
Referenced by add_rosetta_options_1().
FileOptionKey const basic::options::OptionKeys::score::hrf_dynamics_input |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::ideal_sugars |
Referenced by add_rosetta_options_2().
IntegerOptionKey const basic::options::OptionKeys::score::ignore_terminal_ss_elements |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::include_intra_res_protein |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::input_etables |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::just_calc_rmsd |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::ldsrbb_high_scale |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::ldsrbb_low_scale |
Referenced by add_rosetta_options_2().
IntegerOptionKey const basic::options::OptionKeys::score::ldsrbb_maxlength |
Referenced by add_rosetta_options_2().
IntegerOptionKey const basic::options::OptionKeys::score::ldsrbb_minlength |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::length_dep_srbb |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::linear_bonded_potential |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::lk_polar_without_proline_N |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::score::max_contacting_ss |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::max_motif_per_res |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::mc_interface_weight |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::mc_optimize_dG |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::mc_total_weight |
Referenced by add_rosetta_options_2().
StringVectorOptionKey const basic::options::OptionKeys::score::mhc_epitope_setup_file |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::min_score_score |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::motif_ignore_symmmetry |
Referenced by add_rosetta_options_2().
IntegerVectorOptionKey const basic::options::OptionKeys::score::motif_residues |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::ms_dist_exponent |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::ms_dist_midpoint |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::ms_fade_dist |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::ms_fade_outer |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::ms_fit_intercept |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::ms_fit_slope |
Referenced by add_rosetta_options_2().
StringVectorOptionKey const basic::options::OptionKeys::score::netcharge_setup_file |
Referenced by add_rosetta_options_2().
StringOptionKey const basic::options::OptionKeys::score::nmer_pssm |
Referenced by add_rosetta_options_2().
StringOptionKey const basic::options::OptionKeys::score::nmer_pssm_list |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::nmer_pssm_scorecut |
Referenced by add_rosetta_options_2().
StringOptionKey const basic::options::OptionKeys::score::nmer_ref_energies |
Referenced by add_rosetta_options_2().
StringOptionKey const basic::options::OptionKeys::score::nmer_ref_energies_list |
Referenced by add_rosetta_options_2().
IntegerOptionKey const basic::options::OptionKeys::score::nmer_ref_seq_length |
Referenced by add_rosetta_options_2().
StringOptionKey const basic::options::OptionKeys::score::nmer_svm |
Referenced by add_rosetta_options_2().
StringOptionKey const basic::options::OptionKeys::score::nmer_svm_aa_matrix |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::nmer_svm_avg_rank_as_energy |
Referenced by add_rosetta_options_2().
StringOptionKey const basic::options::OptionKeys::score::nmer_svm_list |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::nmer_svm_pssm_feat |
Referenced by add_rosetta_options_2().
StringOptionKey const basic::options::OptionKeys::score::nmer_svm_rank |
Referenced by add_rosetta_options_2().
StringOptionKey const basic::options::OptionKeys::score::nmer_svm_rank_list |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::nmer_svm_scorecut |
Referenced by add_rosetta_options_2().
IntegerOptionKey const basic::options::OptionKeys::score::nmer_svm_term_length |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::no_lk_polar_desolvation |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::no_pro_close_ring_closure |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::no_smooth_etables |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::NV_lbound |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::NV_table |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::NV_ubound |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::optH_patch |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::optH_weights |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::output_etables |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::output_residue_energies |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::pack_weights |
Referenced by add_rosetta_options_1().
FileVectorOptionKey const basic::options::OptionKeys::score::patch |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::pro_close_planar_constraint |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::protein_dielectric |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::put_intra_into_total |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::rama_power |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::ramaneighbors |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::ref_offset |
Referenced by add_rosetta_options_1().
StringVectorOptionKey const basic::options::OptionKeys::score::ref_offsets |
Referenced by add_rosetta_options_1().
IntegerVectorOptionKey const basic::options::OptionKeys::score::rg_local_span |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::ring_close_shadow_constraint |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::rms_target |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::rna_torsion_potential |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::score |
Referenced by add_rosetta_options_1(), UBQ_GTPase_disulfide_Mover::analyze_and_filter(), UBQ_E2Mover::analyze_and_filter(), calculate_average_residue_scores(), CAtrace::CAtrace(), do_color_by_score(), fit_helix_in_map(), helix_from_sequence(), main(), myMC::myMC(), numeric::interpolation::polycubic_interpolation(), basic::options::process(), read_silent_input_as_library(), myMC::roll(), SolutionRescoreMover::run(), basic::svd::SVD_Solver::run_score_svd_on_matrix(), basic::svd::SVD_Solver::run_score_svd_without_solving(), save_per_residue_scores(), and numeric::VoxelGrid< typename >::SetupGrid().
BooleanOptionKey const basic::options::OptionKeys::score::score_pose_cutpoint_variants |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::secondary_seqdep_refene_fname |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::seqdep_refene_fname |
Referenced by add_rosetta_options_1().
StringVectorOptionKey const basic::options::OptionKeys::score::set_weights |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::show_etable_contributions |
Referenced by add_rosetta_options_1().
IntegerVectorOptionKey const basic::options::OptionKeys::score::sidechain_buried |
Referenced by add_rosetta_options_1().
IntegerVectorOptionKey const basic::options::OptionKeys::score::sidechain_exposed |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::smooth_fa_elec |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::soft_wts |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::stack_elec_sigmoidal_die |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::score::symE_bonus |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::score::symE_units |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::symmetric_gly_tables |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::target_clash_pdb |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::unmodifypot |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::use_gen_kirkwood |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::use_hb_env_dep |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::score::use_polarization |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::voids_penalty_energy_cone_distance_cutoff |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::voids_penalty_energy_cone_dotproduct_cutoff |
Referenced by add_rosetta_options_2().
IntegerOptionKey const basic::options::OptionKeys::score::voids_penalty_energy_containing_cones_cutoff |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::voids_penalty_energy_disabled_except_during_packing |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::voids_penalty_energy_voxel_grid_padding |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::voids_penalty_energy_voxel_size |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::water_dielectric |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::water_hybrid_sf |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::score::weights |