utility::sql_database::DatabaseSessionManager Class Reference

#include <DatabaseSessionManager.hh>

Inheritance diagram for utility::sql_database::DatabaseSessionManager:

Public Member Functions
virtual	~DatabaseSessionManager ()
sessionOP	get_db_session (DatabaseMode::e db_mode, TransactionMode::e transaction_mode, platform::Size chunk_size, std::string const &db_name, std::string const &pq_schema, std::string const &host, std::string const &user, std::string const &password, platform::Size port, bool readonly=false, platform::SSize db_partition=-1)
	Acquire a database session. More...
sessionOP	get_session_sqlite3 (std::string const &database, TransactionMode::e transaction_mode=utility::sql_database::TransactionMode::standard, platform::Size chunk_size=0, bool const readonly=false, platform::SSize db_partition=-1)
	Acquire a sqlite3 database session. More...
sessionOP	get_session_mysql (std::string const &database, TransactionMode::e transaction_mode, platform::Size chunk_size, std::string const &host, std::string const &user, std::string const &password, platform::Size port)
	Acquire a mysql database session. More...
sessionOP	get_session_postgres (std::string const &database, TransactionMode::e transaction_mode, platform::Size chunk_size, std::string const &pq_schema, std::string const &host, std::string const &user, std::string const &password, platform::Size port)
	Acquire a postgres database session. More...
Public Member Functions inherited from utility::SingletonBase< DatabaseSessionManager >
	SingletonBase ()
	public constructor (the derived class must have a private constructor, of course). More...

Protected Member Functions
	DatabaseSessionManager ()
	DatabaseSessionManager (const DatabaseSessionManager &src)=delete
DatabaseSessionManager &	operator= (const DatabaseSessionManager &src)=delete

Private Member Functions
void	set_postgres_schema_search_path (sessionOP db_session, utility::vector1< std::string > const &schema_search_path)

Friends
class	utility::SingletonBase< DatabaseSessionManager >

Additional Inherited Members
Static Public Member Functions inherited from utility::SingletonBase< DatabaseSessionManager >
static DatabaseSessionManager *	get_instance ()
	Safely instantiate a singleton class in a (possibly) multithreaded context. More...

Constructor & Destructor Documentation

utility::sql_database::DatabaseSessionManager::DatabaseSessionManager ( )

protecteddefault

utility::sql_database::DatabaseSessionManager::DatabaseSessionManager ( const DatabaseSessionManager &  src )

protecteddelete

utility::sql_database::DatabaseSessionManager::~DatabaseSessionManager ( )

virtualdefault

Member Function Documentation

sessionOP utility::sql_database::DatabaseSessionManager::get_db_session	(	DatabaseMode::e	db_mode,
		TransactionMode::e	transaction_mode,
		platform::Size	chunk_size,
		std::string const &	db_name,
		std::string const &	pq_schema,
		std::string const &	host,
		std::string const &	user,
		std::string const &	password,
		platform::Size	port,
		bool	readonly = false,
		platform::SSize	db_partition = -1
	)

Acquire a database session.

References get_session_mysql(), get_session_postgres(), get_session_sqlite3(), utility::sql_database::DatabaseMode::mysql, utility::sql_database::name_from_database_mode(), utility::sql_database::DatabaseMode::postgres, utility::sql_database::DatabaseMode::sqlite3, and utility_exit_with_message.

Referenced by basic::database::parse_database_connection().

sessionOP utility::sql_database::DatabaseSessionManager::get_session_mysql	(	std::string const &	database,
		TransactionMode::e	transaction_mode,
		platform::Size	chunk_size,
		std::string const &	host,
		std::string const &	user,
		std::string const &	password,
		platform::Size	port
	)

Acquire a mysql database session.

References basic::options::OptionKeys::in::path::database, basic::options::OptionKeys::cloud::host, utility::sql_database::DatabaseMode::mysql, basic::options::OptionKeys::inout::dbms::password, basic::options::OptionKeys::cloud::port, basic::options::OptionKeys::in::file::s, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

Referenced by basic::database::get_db_session(), and get_db_session().

sessionOP utility::sql_database::DatabaseSessionManager::get_session_postgres	(	std::string const &	database,
		TransactionMode::e	transaction_mode,
		platform::Size	chunk_size,
		std::string const &	pq_schema,
		std::string const &	host,
		std::string const &	user,
		std::string const &	password,
		platform::Size	port
	)

Acquire a postgres database session.

References basic::options::OptionKeys::in::path::database, basic::options::OptionKeys::cloud::host, basic::options::OptionKeys::inout::dbms::password, basic::options::OptionKeys::cloud::port, utility::sql_database::DatabaseMode::postgres, basic::options::OptionKeys::inout::dbms::pq_schema, basic::options::OptionKeys::in::file::s, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

Referenced by basic::database::get_db_session(), and get_db_session().

sessionOP utility::sql_database::DatabaseSessionManager::get_session_sqlite3	(	std::string const &	database,
		TransactionMode::e	transaction_mode = utility::sql_database::TransactionMode::standard,
		platform::Size	chunk_size = 0,
		bool const	readonly = false,
		platform::SSize	db_partition = -1
	)

Acquire a sqlite3 database session.

details@ For SQLite3 database, the db_partition is app appends "_<mpi_rank>" to the end of the database filename This is useful when writing to an sqlite database not through the job distributor where locking causes problems

References basic::options::OptionKeys::in::file::s, and utility::sql_database::DatabaseMode::sqlite3.

Referenced by basic::database::get_db_session(), and get_db_session().

DatabaseSessionManager& utility::sql_database::DatabaseSessionManager::operator= ( const DatabaseSessionManager &  src )

protecteddelete

void utility::sql_database::DatabaseSessionManager::set_postgres_schema_search_path ( sessionOP  db_session, utility::vector1< std::string > const &  schema_search_path  )

private

postgres does not allow queries between databases, instead it allows tables to be created in different namespaces called "schemas". By specifing the search path, statements will be executed in a specified namespace. Note setting the search path only affects this session.

For example, to use the schema UBQdesign_stage1_r456644_120323, set set the search path with the vector ["UBQdesign_stage1_r456644_120323"]. See: http://www.postgresql.org/docs/8.1/static/ddl-schemas.html

References test.T150_PyMOL_Integration::i.

Friends And Related Function Documentation

friend class utility::SingletonBase< DatabaseSessionManager >

friend

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The documentation for this class was generated from the following files:

• src/utility/sql_database/DatabaseSessionManager.hh
• src/utility/sql_database/DatabaseSessionManager.cc