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cluster.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces

 basic
 Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
 
 basic::options
 
 basic::options::OptionKeys
 
 basic::options::OptionKeys::cluster
 
 basic::options::OptionKeys::cluster::energy_based_clustering
 

Variables

BooleanOptionKey const basic::options::OptionKeys::cluster::cluster
 
BooleanOptionKey const basic::options::OptionKeys::cluster::lite
 
RealOptionKey const basic::options::OptionKeys::cluster::input_score_filter
 
RealOptionKey const basic::options::OptionKeys::cluster::output_score_filter
 
IntegerVectorOptionKey const basic::options::OptionKeys::cluster::exclude_res
 
RealOptionKey const basic::options::OptionKeys::cluster::thinout_factor
 
RealOptionKey const basic::options::OptionKeys::cluster::radius
 
IntegerOptionKey const basic::options::OptionKeys::cluster::limit_cluster_size
 
RealOptionKey const basic::options::OptionKeys::cluster::limit_cluster_size_percent
 
RealOptionKey const basic::options::OptionKeys::cluster::random_limit_cluster_size_percent
 
IntegerOptionKey const basic::options::OptionKeys::cluster::limit_clusters
 
IntegerOptionKey const basic::options::OptionKeys::cluster::limit_total_structures
 
IntegerOptionKey const basic::options::OptionKeys::cluster::max_total_cluster
 
BooleanOptionKey const basic::options::OptionKeys::cluster::gdtmm
 
BooleanOptionKey const basic::options::OptionKeys::cluster::skip_align
 
IntegerOptionKey const basic::options::OptionKeys::cluster::max_rms_matrix
 
BooleanOptionKey const basic::options::OptionKeys::cluster::rna_P
 
BooleanOptionKey const basic::options::OptionKeys::cluster::sort_groups_by_energy
 
BooleanOptionKey const basic::options::OptionKeys::cluster::sort_groups_by_size
 
BooleanOptionKey const basic::options::OptionKeys::cluster::remove_singletons
 
BooleanOptionKey const basic::options::OptionKeys::cluster::export_only_low
 
BooleanOptionKey const basic::options::OptionKeys::cluster::remove_highest_energy_member
 
BooleanOptionKey const basic::options::OptionKeys::cluster::idealize_final_structures
 
IntegerOptionKey const basic::options::OptionKeys::cluster::limit_dist_matrix
 
BooleanOptionKey const basic::options::OptionKeys::cluster::make_ensemble_cst
 
BooleanOptionKey const basic::options::OptionKeys::cluster::hotspot_hash
 
BooleanOptionKey const basic::options::OptionKeys::cluster::loops
 
RealOptionKey const basic::options::OptionKeys::cluster::population_weight
 
StringOptionKey const basic::options::OptionKeys::cluster::template_scores
 
IntegerOptionKey const basic::options::OptionKeys::cluster::K_level
 
RealVectorOptionKey const basic::options::OptionKeys::cluster::K_radius
 
IntegerVectorOptionKey const basic::options::OptionKeys::cluster::K_n_cluster
 
StringVectorOptionKey const basic::options::OptionKeys::cluster::K_style
 
IntegerOptionKey const basic::options::OptionKeys::cluster::K_n_sub
 
IntegerOptionKey const basic::options::OptionKeys::cluster::K_deque_size
 
IntegerOptionKey const basic::options::OptionKeys::cluster::K_deque_level
 
BooleanOptionKey const basic::options::OptionKeys::cluster::K_redundant
 
BooleanOptionKey const basic::options::OptionKeys::cluster::K_not_fit_xyz
 
BooleanOptionKey const basic::options::OptionKeys::cluster::K_save_headers
 
RealOptionKey const basic::options::OptionKeys::cluster::score_diff_cut
 
BooleanOptionKey const basic::options::OptionKeys::cluster::auto_tune
 
BooleanOptionKey const basic::options::OptionKeys::cluster::write_centers
 
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::energy_based_clustering
 
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::prerelax
 
IntegerOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::relax_rounds
 
StringOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cluster_by
 
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::use_CB
 
RealOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cluster_radius
 
IntegerVectorOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::residues_to_ignore
 
IntegerVectorOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::chains_to_ignore
 
IntegerOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::limit_structures_per_cluster
 
IntegerOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::limit_clusters
 
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cyclic
 
IntegerOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_symmetry
 
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_symmetry_mirroring
 
RealOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_symmetry_threshold
 
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cluster_cyclic_permutations
 
IntegerOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_permutation_offset
 
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::perform_ABOXYZ_bin_analysis
 
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::mutate_to_ala
 
IntegerVectorOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::disulfide_positions
 
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::homooligomer_swap
 
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::silent_output
 
FileVectorOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cst_file
 
StringVectorOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::extra_rms_atoms
 
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::rebuild_all_in_dihedral_mode
 

Detailed Description

basic::options::OptionKeys collection

Author
Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)
James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)