Rosetta  2019.47
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rna_design.cc File Reference
#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeFinder.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/ConstraintSet.fwd.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/rna/RNA_ResidueLevelTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/ResfileReader.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/rotamer_trials.hh>
#include <core/pack/palette/CustomBaseTypePackerPalette.hh>
#include <core/pack/palette/PackerPalette.hh>
#include <core/pack/palette/PackerPaletteFactory.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <protocols/viewer/viewers.hh>
#include <core/pose/Pose.hh>
#include <core/init/init.hh>
#include <core/id/AtomID.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <core/pose/toolbox/AtomLevelDomainMap.hh>
#include <protocols/rna/denovo/movers/RNA_Minimizer.hh>
#include <core/import_pose/options/RNA_MinimizerOptions.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <protocols/rna/denovo/util.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <sstream>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/keys/full_model.OptionKeys.gen.hh>
#include <platform/types.hh>
#include <core/import_pose/import_pose.hh>
#include <core/kinematics/Jump.hh>
#include <utility/vector0.hh>
#include <ObjexxFCL/DynamicIndexRange.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <utility/excn/Exceptions.hh>

Namespaces

 ObjexxFCL
 
 ObjexxFCL::format
 

Functions

void rna_sequence_recovery_metrics (pose::Pose const &reference_pose, utility::vector1< pose::PoseOP > const &pose_list, std::string const &sequence_recovery_file)
 
bool residues_too_distant (conformation::Residue const &r1, conformation::Residue const &r2, Real const dist)
 
void rna_design_test ()
 
void ss_ds_ts_assign_test ()
 
void * my_main (void *)
 
int main (int argc, char *argv[])
 

Function Documentation

int main ( int  argc,
char *  argv[] 
)
void* my_main ( void *  )
bool residues_too_distant ( conformation::Residue const &  r1,
conformation::Residue const &  r2,
Real const  dist 
)
void rna_design_test ( )
void rna_sequence_recovery_metrics ( pose::Pose const &  reference_pose,
utility::vector1< pose::PoseOP > const &  pose_list,
std::string const &  sequence_recovery_file 
)
void ss_ds_ts_assign_test ( )