Rosetta  2020.37
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Functions
pyrosetta.protocols.structure_search.alignment Namespace Reference

Functions

def length_blocks
 
def length_grouped_pairwise_metric
 
def length_grouped_broadcast_metric
 
def fragment_unaligned_pairwise_rmsd
 
def fragment_pairwise_rmsd
 
def fragment_unaligned_broadcast_rmsd
 
def fragment_broadcast_rmsd
 

Function Documentation

def pyrosetta.protocols.structure_search.alignment.fragment_broadcast_rmsd (   fragment_residues_a,
  fragment_residues_b 
)
Calculate aligned rmsd over given, potentially uniqual length, residue arrays.

References pyrosetta.protocols.structure_search.alignment.length_grouped_broadcast_metric().

def pyrosetta.protocols.structure_search.alignment.fragment_pairwise_rmsd (   fragment_residues)
Calculate pairwise rmsd over given, potentially uniqual length, residue arrays.

References pyrosetta.protocols.structure_search.alignment.length_grouped_pairwise_metric().

def pyrosetta.protocols.structure_search.alignment.fragment_unaligned_broadcast_rmsd (   fragment_residues_a,
  fragment_residues_b 
)
Calculate unaligned rmsd over given, potentially uniqual length, residue arrays.

References pyrosetta.protocols.structure_search.alignment.length_grouped_broadcast_metric().

def pyrosetta.protocols.structure_search.alignment.fragment_unaligned_pairwise_rmsd (   fragment_residues)
Calculate pairwise rmsd over given, potentially uniqual length, residue arrays.

References pyrosetta.protocols.structure_search.alignment.length_grouped_pairwise_metric().

def pyrosetta.protocols.structure_search.alignment.length_blocks (   jagged_array)
def pyrosetta.protocols.structure_search.alignment.length_grouped_broadcast_metric (   samp_a,
  samp_b,
  broadcast_metric 
)
def pyrosetta.protocols.structure_search.alignment.length_grouped_pairwise_metric (   samples,
  pairwise_metric 
)