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loops.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces

 basic
 Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
 
 basic::options
 
 basic::options::OptionKeys
 
 basic::options::OptionKeys::loops
 
 basic::options::OptionKeys::loops::ccd
 

Variables

BooleanOptionKey const basic::options::OptionKeys::loops::loops
 
StringOptionKey const basic::options::OptionKeys::loops::cen_weights
 
StringOptionKey const basic::options::OptionKeys::loops::cen_patch
 
FileOptionKey const basic::options::OptionKeys::loops::input_pdb
 Input options#####################################. More...
 
StringVectorOptionKey const basic::options::OptionKeys::loops::loop_file
 
FileOptionKey const basic::options::OptionKeys::loops::extended_loop_file
 
FileOptionKey const basic::options::OptionKeys::loops::mm_loop_file
 
BooleanOptionKey const basic::options::OptionKeys::loops::fix_natsc
 
BooleanOptionKey const basic::options::OptionKeys::loops::refine_only
 
BooleanOptionKey const basic::options::OptionKeys::loops::fast
 
FileOptionKey const basic::options::OptionKeys::loops::vall_file
 
IntegerVectorOptionKey const basic::options::OptionKeys::loops::frag_sizes
 
FileVectorOptionKey const basic::options::OptionKeys::loops::frag_files
 
FileOptionKey const basic::options::OptionKeys::loops::output_pdb
 
BooleanOptionKey const basic::options::OptionKeys::loops::debug
 
BooleanOptionKey const basic::options::OptionKeys::loops::build_initial
 
BooleanOptionKey const basic::options::OptionKeys::loops::extended
 
BooleanOptionKey const basic::options::OptionKeys::loops::remove_extended_loops
 
BooleanOptionKey const basic::options::OptionKeys::loops::idealize_after_loop_close
 
BooleanOptionKey const basic::options::OptionKeys::loops::idealize_before_loop_close
 
IntegerOptionKey const basic::options::OptionKeys::loops::select_best_loop_from
 
IntegerOptionKey const basic::options::OptionKeys::loops::build_attempts
 
IntegerOptionKey const basic::options::OptionKeys::loops::grow_attempts
 
RealOptionKey const basic::options::OptionKeys::loops::random_grow_loops_by
 
BooleanOptionKey const basic::options::OptionKeys::loops::accept_aborted_loops
 
BooleanOptionKey const basic::options::OptionKeys::loops::strict_loops
 
BooleanOptionKey const basic::options::OptionKeys::loops::superimpose_native
 
IntegerVectorOptionKey const basic::options::OptionKeys::loops::build_specific_loops
 
BooleanOptionKey const basic::options::OptionKeys::loops::random_order
 
BooleanOptionKey const basic::options::OptionKeys::loops::build_all_loops
 
BooleanOptionKey const basic::options::OptionKeys::loops::fa_closure_protocol
 
RealOptionKey const basic::options::OptionKeys::loops::combine_rate
 
BooleanOptionKey const basic::options::OptionKeys::loops::skip_initial_loop_build
 
StringOptionKey const basic::options::OptionKeys::loops::remodel
 
StringOptionKey const basic::options::OptionKeys::loops::intermedrelax
 
StringOptionKey const basic::options::OptionKeys::loops::refine
 
StringOptionKey const basic::options::OptionKeys::loops::relax
 
BooleanOptionKey const basic::options::OptionKeys::loops::final_clean_fastrelax
 
BooleanOptionKey const basic::options::OptionKeys::loops::relax_with_foldtree
 
RealOptionKey const basic::options::OptionKeys::loops::constrain_rigid_segments
 
StringOptionKey const basic::options::OptionKeys::loops::loopscores
 
BooleanOptionKey const basic::options::OptionKeys::loops::timer
 
BooleanOptionKey const basic::options::OptionKeys::loops::vicinity_sampling
 
RealOptionKey const basic::options::OptionKeys::loops::vicinity_degree
 
RealOptionKey const basic::options::OptionKeys::loops::neighbor_dist
 
IntegerOptionKey const basic::options::OptionKeys::loops::kic_max_seglen
 
BooleanOptionKey const basic::options::OptionKeys::loops::kic_recover_last
 
BooleanOptionKey const basic::options::OptionKeys::loops::kic_min_after_repack
 
BooleanOptionKey const basic::options::OptionKeys::loops::optimize_only_kic_region_sidechains_after_move
 
IntegerOptionKey const basic::options::OptionKeys::loops::max_kic_build_attempts
 
IntegerOptionKey const basic::options::OptionKeys::loops::remodel_kic_attempts
 
IntegerOptionKey const basic::options::OptionKeys::loops::max_kic_perturber_samples
 
BooleanOptionKey const basic::options::OptionKeys::loops::nonpivot_torsion_sampling
 
BooleanOptionKey const basic::options::OptionKeys::loops::fix_ca_bond_angles
 
BooleanOptionKey const basic::options::OptionKeys::loops::kic_use_linear_chainbreak
 
BooleanOptionKey const basic::options::OptionKeys::loops::sample_omega_at_pre_prolines
 
BooleanOptionKey const basic::options::OptionKeys::loops::allow_omega_move
 
BooleanOptionKey const basic::options::OptionKeys::loops::kic_with_cartmin
 
BooleanOptionKey const basic::options::OptionKeys::loops::allow_takeoff_torsion_move
 
IntegerOptionKey const basic::options::OptionKeys::loops::extend_length
 
IntegerOptionKey const basic::options::OptionKeys::loops::perturb_outer_cycles
 
IntegerOptionKey const basic::options::OptionKeys::loops::refine_outer_cycles
 
IntegerOptionKey const basic::options::OptionKeys::loops::max_inner_cycles
 
IntegerOptionKey const basic::options::OptionKeys::loops::repack_period
 
RealOptionKey const basic::options::OptionKeys::loops::remodel_init_temp
 
RealOptionKey const basic::options::OptionKeys::loops::remodel_final_temp
 
RealOptionKey const basic::options::OptionKeys::loops::refine_init_temp
 
RealOptionKey const basic::options::OptionKeys::loops::refine_final_temp
 
IntegerOptionKey const basic::options::OptionKeys::loops::gapspan
 
IntegerOptionKey const basic::options::OptionKeys::loops::spread
 
IntegerOptionKey const basic::options::OptionKeys::loops::kinematic_wrapper_cycles
 
IntegerOptionKey const basic::options::OptionKeys::loops::kic_num_rotamer_trials
 
BooleanOptionKey const basic::options::OptionKeys::loops::kic_omega_sampling
 
RealOptionKey const basic::options::OptionKeys::loops::kic_bump_overlap_factor
 
IntegerOptionKey const basic::options::OptionKeys::loops::minimize_max_iter
 
StringOptionKey const basic::options::OptionKeys::loops::restrict_kic_sampling_to_torsion_string
 
BooleanOptionKey const basic::options::OptionKeys::loops::derive_torsion_string_from_native_pose
 
BooleanOptionKey const basic::options::OptionKeys::loops::always_remodel_full_loop
 
BooleanOptionKey const basic::options::OptionKeys::loops::taboo_sampling
 
BooleanOptionKey const basic::options::OptionKeys::loops::taboo_in_fa
 
BooleanOptionKey const basic::options::OptionKeys::loops::ramp_fa_rep
 
BooleanOptionKey const basic::options::OptionKeys::loops::ramp_rama
 
BooleanOptionKey const basic::options::OptionKeys::loops::kic_rama2b
 
BooleanOptionKey const basic::options::OptionKeys::loops::kic_leave_centroid_after_initial_closure
 
BooleanOptionKey const basic::options::OptionKeys::loops::legacy_kic
 
BooleanOptionKey const basic::options::OptionKeys::loops::alternative_closure_protocol
 
RealOptionKey const basic::options::OptionKeys::loops::chainbreak_max_accept
 
BooleanOptionKey const basic::options::OptionKeys::loops::debug_loop_closure
 
BooleanOptionKey const basic::options::OptionKeys::loops::non_ideal_loop_closing
 
RealOptionKey const basic::options::OptionKeys::loops::scored_frag_cycles
 
RealOptionKey const basic::options::OptionKeys::loops::short_frag_cycles
 
RealOptionKey const basic::options::OptionKeys::loops::rmsd_tol
 
RealOptionKey const basic::options::OptionKeys::loops::chain_break_tol
 
BooleanOptionKey const basic::options::OptionKeys::loops::random_loop
 
FileVectorOptionKey const basic::options::OptionKeys::loops::stealfrags
 
IntegerOptionKey const basic::options::OptionKeys::loops::stealfrags_times
 
RealOptionKey const basic::options::OptionKeys::loops::coord_cst
 
RealOptionKey const basic::options::OptionKeys::loops::skip_1mers
 
RealOptionKey const basic::options::OptionKeys::loops::skip_3mers
 
RealOptionKey const basic::options::OptionKeys::loops::skip_9mers
 
BooleanOptionKey const basic::options::OptionKeys::loops::loop_model
 
RealOptionKey const basic::options::OptionKeys::loops::score_filter_cutoff
 
BooleanOptionKey const basic::options::OptionKeys::loops::ccd_closure
 
BooleanOptionKey const basic::options::OptionKeys::loops::skip_ccd_moves
 
BooleanOptionKey const basic::options::OptionKeys::loops::no_randomize_loop
 
BooleanOptionKey const basic::options::OptionKeys::loops::loops_subset
 
IntegerOptionKey const basic::options::OptionKeys::loops::num_desired_loops
 
RealOptionKey const basic::options::OptionKeys::loops::loop_combine_rate
 
RealOptionKey const basic::options::OptionKeys::loops::final_score_filter
 
BooleanOptionKey const basic::options::OptionKeys::loops::no_combine_if_fail
 
BooleanOptionKey const basic::options::OptionKeys::loops::shorten_long_terminal_loop
 
IntegerOptionKey const basic::options::OptionKeys::loops::backrub_trials
 
RealOptionKey const basic::options::OptionKeys::loops::looprlx_cycle_ratio
 
RealOptionKey const basic::options::OptionKeys::loops::extended_beta
 
BooleanOptionKey const basic::options::OptionKeys::loops::no_looprebuild
 
BooleanOptionKey const basic::options::OptionKeys::loops::allow_lig_move
 
FileOptionKey const basic::options::OptionKeys::loops::keep_natro
 
IntegerOptionKey const basic::options::OptionKeys::loops::refine_design_iterations
 
BooleanOptionKey const basic::options::OptionKeys::loops::ccd::ccd
 
RealOptionKey const basic::options::OptionKeys::loops::ccd::max_rama_score_increase
 
RealVectorOptionKey const basic::options::OptionKeys::loops::ccd::max_torsion_delta_per_move
 
RealVectorOptionKey const basic::options::OptionKeys::loops::ccd::max_torsion_delta
 
RealOptionKey const basic::options::OptionKeys::loops::ccd::tolerance
 
IntegerOptionKey const basic::options::OptionKeys::loops::ccd::max_cycles
 
BooleanOptionKey const basic::options::OptionKeys::loops::ccd::check_rama_scores
 
BooleanOptionKey const basic::options::OptionKeys::loops::ccd::rama_2b
 
RealOptionKey const basic::options::OptionKeys::loops::ccd::temperature
 

Detailed Description

basic::options::OptionKeys collection

Author
Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)
James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)