Rosetta  2019.47
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Classes | Functions | Variables
rna_denovo.cc File Reference
#include <utility/json_utilities.hh>
#include <core/types.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <protocols/viewer/viewers.hh>
#include <core/pose/Pose.hh>
#include <devel/init.hh>
#include <utility/vector1.hh>
#include <protocols/rna/denovo/RNA_DeNovoProtocol.hh>
#include <core/import_pose/RNA_DeNovoSetup.hh>
#include <core/import_pose/options/RNA_DeNovoProtocolOptions.hh>
#include <protocols/rna/denovo/RNA_FragmentMonteCarlo.hh>
#include <core/fragment/rna/FullAtomRNA_Fragments.hh>
#include <protocols/rna/movers/RNA_LoopCloser.hh>
#include <core/import_pose/RNA_BasePairHandler.hh>
#include <protocols/rna/denovo/movers/RNA_Minimizer.hh>
#include <core/import_pose/RNA_DeNovoParameters.hh>
#include <protocols/rna/denovo/movers/RNA_Relaxer.hh>
#include <protocols/rna/denovo/RNA_DeNovoPoseInitializer.hh>
#include <core/import_pose/libraries/RNA_ChunkLibrary.hh>
#include <protocols/rna/setup/RNA_MonteCarloJobDistributor.hh>
#include <protocols/rna/setup/RNA_CSA_JobDistributor.hh>
#include <core/pose/rna/RNA_BasePairClassifier.hh>
#include <protocols/rna/denovo/util.hh>
#include <protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.hh>
#include <protocols/scoring/VDW_CachedRepScreenInfo.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/rna/RNA_ScoringInfo.hh>
#include <core/chemical/rna/util.hh>
#include <core/scoring/rna/chemical_shift/RNA_ChemicalShiftPotential.hh>
#include <core/id/AtomID_Map.hh>
#include <core/id/AtomID.hh>
#include <core/id/DOF_ID.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/util.hh>
#include <core/io/silent/RNA_SilentStruct.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentFileOptions.hh>
#include <core/io/silent/util.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/pose/rna/RNA_BaseDoubletClasses.hh>
#include <core/pose/rna/util.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <protocols/jd3/chunk_library/ChunkLibraryJobQueen.hh>
#include <protocols/jd3/chunk_library/MoverAndChunkLibraryJob.hh>
#include <protocols/jd3/LarvalJob.hh>
#include <protocols/jd3/JobDistributor.hh>
#include <protocols/jd3/JobDistributorFactory.hh>
#include <protocols/jd3/JobQueen.hh>
#include <core/scoring/Energies.hh>
#include <iostream>
#include <string>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <basic/options/keys/stepwise.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/full_model.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/sequence/Sequence.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/options/keys/OptionKeyList.hh>

Classes

class  RNA_DeNovoJobQueen
 

Functions

void rna_denovo ()
 
void rna_denovo_legacy ()
 
void * my_main (void *)
 
int main (int argc, char *argv[])
 

Variables

static basic::Tracer TR ("apps.public.rna.denovo")
 

Detailed Description

Author
Rhiju Das

Function Documentation

int main ( int  argc,
char *  argv[] 
)
void* my_main ( void *  )
void rna_denovo ( )
void rna_denovo_legacy ( )

Variable Documentation

basic::Tracer TR("apps.public.rna.denovo")
static