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Variables
make_symmdef_file_denovo Namespace Reference

Variables

int length = -1
 
tuple pos = argv.index('-symm_type')
 
list symm_type_name = argv[pos+1]
 
list nsub = argv[pos+1]
 
int subsystem_size = 0
 
string slide_type = ""
 
string slide_criteria_type = ""
 
string slide_order = ""
 
string slide_criteria_val = ""
 
tuple subunits = int(nsub)
 
list interfaces = []
 
int num_interfaces = 0
 
string E_string = "E = "
 
int interface_num = 0
 
int jump_num = sub+1
 
int vrt_start_num = sub+1
 
int vrt_stop_num = sub+2
 
string jump_start = 'VRT'
 
string jump_stop = 'VRT'
 
tuple rotation_z = float(2*360.000/(float(subunits)))
 
int z_jump = subunits/2
 
tuple z_random_rotation = float(360.000/float(subunits))
 
tuple rot_z1 = float(360.000/float(subunits))
 
float rot_z2 = 360.000
 
float rotation_z2 = 360.000
 

Variable Documentation

string make_symmdef_file_denovo.E_string = "E = "
int make_symmdef_file_denovo.interface_num = 0
list make_symmdef_file_denovo.interfaces = []
int make_symmdef_file_denovo.jump_num = sub+1
string make_symmdef_file_denovo.jump_start = 'VRT'
string make_symmdef_file_denovo.jump_stop = 'VRT'
int make_symmdef_file_denovo.length = -1
list make_symmdef_file_denovo.nsub = argv[pos+1]
int make_symmdef_file_denovo.num_interfaces = 0
tuple make_symmdef_file_denovo.pos = argv.index('-symm_type')
tuple make_symmdef_file_denovo.rot_z1 = float(360.000/float(subunits))
float make_symmdef_file_denovo.rot_z2 = 360.000
tuple make_symmdef_file_denovo.rotation_z = float(2*360.000/(float(subunits)))
float make_symmdef_file_denovo.rotation_z2 = 360.000
list make_symmdef_file_denovo.slide_criteria_type = ""
list make_symmdef_file_denovo.slide_criteria_val = ""
string make_symmdef_file_denovo.slide_order = ""
list make_symmdef_file_denovo.slide_type = ""
int make_symmdef_file_denovo.subsystem_size = 0
tuple make_symmdef_file_denovo.subunits = int(nsub)
list make_symmdef_file_denovo.symm_type_name = argv[pos+1]
int make_symmdef_file_denovo.vrt_start_num = sub+1
int make_symmdef_file_denovo.vrt_stop_num = sub+2
int make_symmdef_file_denovo.z_jump = subunits/2
tuple make_symmdef_file_denovo.z_random_rotation = float(360.000/float(subunits))