Rosetta  2020.37
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Functions
cm::hybridize Namespace Reference

Functions

BooleanOptionKey const hybridize ("cm:hybridize")
 
IntegerVectorOptionKey const starting_template ("cm:hybridize:starting_template")
 
BooleanOptionKey const realign_domains ("cm:hybridize:realign_domains")
 
BooleanOptionKey const realign_domains_stage2 ("cm:hybridize:realign_domains_stage2")
 
IntegerOptionKey const add_non_init_chunks ("cm:hybridize:add_non_init_chunks")
 
RealOptionKey const stage1_increase_cycles ("cm:hybridize:stage1_increase_cycles")
 
RealOptionKey const stage2_increase_cycles ("cm:hybridize:stage2_increase_cycles")
 
RealOptionKey const stage2min_increase_cycles ("cm:hybridize:stage2min_increase_cycles")
 
RealOptionKey const stage1_probability ("cm:hybridize:stage1_probability")
 
BooleanOptionKey const skip_stage2 ("cm:hybridize:skip_stage2")
 
BooleanOptionKey const no_global_frame ("cm:hybridize:no_global_frame")
 
BooleanOptionKey const linmin_only ("cm:hybridize:linmin_only")
 
IntegerOptionKey const relax ("cm:hybridize:relax")
 
RealOptionKey const frag_weight_aligned ("cm:hybridize:frag_weight_aligned")
 
IntegerOptionKey const max_registry_shift ("cm:hybridize:max_registry_shift")
 
RealOptionKey const frag_1mer_insertion_weight ("cm:hybridize:frag_1mer_insertion_weight")
 
RealOptionKey const small_frag_insertion_weight ("cm:hybridize:small_frag_insertion_weight")
 
RealOptionKey const big_frag_insertion_weight ("cm:hybridize:big_frag_insertion_weight")
 
BooleanOptionKey const auto_frag_insertion_weight ("cm:hybridize:auto_frag_insertion_weight")
 
IntegerOptionKey const stage1_1_cycles ("cm:hybridize:stage1_1_cycles")
 
IntegerOptionKey const stage1_2_cycles ("cm:hybridize:stage1_2_cycles")
 
IntegerOptionKey const stage1_3_cycles ("cm:hybridize:stage1_3_cycles")
 
IntegerOptionKey const stage1_4_cycles ("cm:hybridize:stage1_4_cycles")
 
RealOptionKey const stage2_temperature ("cm:hybridize:stage2_temperature")
 
StringOptionKey const stage1_4_cenrot_score ("cm:hybridize:stage1_4_cenrot_score")
 
BooleanOptionKey const include_loop_ss_chunks ("cm:hybridize:include_loop_ss_chunks")
 

Function Documentation

IntegerOptionKey const cm::hybridize::add_non_init_chunks ( "cm:hybridize:add_non_init_chunks"  )
BooleanOptionKey const cm::hybridize::auto_frag_insertion_weight ( "cm:hybridize:auto_frag_insertion_weight"  )
RealOptionKey const cm::hybridize::big_frag_insertion_weight ( "cm:hybridize:big_frag_insertion_weight"  )
RealOptionKey const cm::hybridize::frag_1mer_insertion_weight ( "cm:hybridize:frag_1mer_insertion_weight"  )
RealOptionKey const cm::hybridize::frag_weight_aligned ( "cm:hybridize:frag_weight_aligned"  )
BooleanOptionKey const cm::hybridize::hybridize ( "cm:hybridize"  )
BooleanOptionKey const cm::hybridize::include_loop_ss_chunks ( "cm:hybridize:include_loop_ss_chunks"  )
BooleanOptionKey const cm::hybridize::linmin_only ( "cm:hybridize:linmin_only"  )
IntegerOptionKey const cm::hybridize::max_registry_shift ( "cm:hybridize:max_registry_shift"  )
BooleanOptionKey const cm::hybridize::no_global_frame ( "cm:hybridize:no_global_frame"  )
BooleanOptionKey const cm::hybridize::realign_domains ( "cm:hybridize:realign_domains"  )
BooleanOptionKey const cm::hybridize::realign_domains_stage2 ( "cm:hybridize:realign_domains_stage2"  )
IntegerOptionKey const cm::hybridize::relax ( "cm:hybridize:relax"  )
BooleanOptionKey const cm::hybridize::skip_stage2 ( "cm:hybridize:skip_stage2"  )
RealOptionKey const cm::hybridize::small_frag_insertion_weight ( "cm:hybridize:small_frag_insertion_weight"  )
IntegerOptionKey const cm::hybridize::stage1_1_cycles ( "cm:hybridize:stage1_1_cycles"  )
IntegerOptionKey const cm::hybridize::stage1_2_cycles ( "cm:hybridize:stage1_2_cycles"  )
IntegerOptionKey const cm::hybridize::stage1_3_cycles ( "cm:hybridize:stage1_3_cycles"  )
StringOptionKey const cm::hybridize::stage1_4_cenrot_score ( "cm:hybridize:stage1_4_cenrot_score"  )
IntegerOptionKey const cm::hybridize::stage1_4_cycles ( "cm:hybridize:stage1_4_cycles"  )
RealOptionKey const cm::hybridize::stage1_increase_cycles ( "cm:hybridize:stage1_increase_cycles"  )
RealOptionKey const cm::hybridize::stage1_probability ( "cm:hybridize:stage1_probability"  )
RealOptionKey const cm::hybridize::stage2_increase_cycles ( "cm:hybridize:stage2_increase_cycles"  )
RealOptionKey const cm::hybridize::stage2_temperature ( "cm:hybridize:stage2_temperature"  )
RealOptionKey const cm::hybridize::stage2min_increase_cycles ( "cm:hybridize:stage2min_increase_cycles"  )
IntegerVectorOptionKey const cm::hybridize::starting_template ( "cm:hybridize:starting_template"  )