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remodel.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces

 basic
 Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
 
 basic::options
 
 basic::options::OptionKeys
 
 basic::options::OptionKeys::remodel
 
 basic::options::OptionKeys::remodel::staged_sampling
 
 basic::options::OptionKeys::remodel::domainFusion
 
 basic::options::OptionKeys::remodel::design
 
 basic::options::OptionKeys::remodel::RemodelLoopMover
 

Variables

BooleanOptionKey const basic::options::OptionKeys::remodel::remodel
 
FileOptionKey const basic::options::OptionKeys::remodel::blueprint
 
FileOptionKey const basic::options::OptionKeys::remodel::cstfile
 
BooleanOptionKey const basic::options::OptionKeys::remodel::cst_fa_only
 
IntegerOptionKey const basic::options::OptionKeys::remodel::cstfilter
 
StringOptionKey const basic::options::OptionKeys::remodel::cen_sfxn
 
BooleanOptionKey const basic::options::OptionKeys::remodel::check_scored_centroid
 
IntegerOptionKey const basic::options::OptionKeys::remodel::num_trajectory
 
IntegerOptionKey const basic::options::OptionKeys::remodel::save_top
 
BooleanOptionKey const basic::options::OptionKeys::remodel::swap_refine_confirm_protocols
 
BooleanOptionKey const basic::options::OptionKeys::remodel::bypass_fragments
 
BooleanOptionKey const basic::options::OptionKeys::remodel::use_same_length_fragments
 
BooleanOptionKey const basic::options::OptionKeys::remodel::no_jumps
 
IntegerOptionKey const basic::options::OptionKeys::remodel::reroot_tree
 
BooleanOptionKey const basic::options::OptionKeys::remodel::use_blueprint_sequence
 
BooleanOptionKey const basic::options::OptionKeys::remodel::quick_and_dirty
 
BooleanOptionKey const basic::options::OptionKeys::remodel::checkpoint
 
BooleanOptionKey const basic::options::OptionKeys::remodel::use_pose_relax
 
BooleanOptionKey const basic::options::OptionKeys::remodel::use_cart_relax
 
BooleanOptionKey const basic::options::OptionKeys::remodel::free_relax
 
StringOptionKey const basic::options::OptionKeys::remodel::generic_aa
 
RealOptionKey const basic::options::OptionKeys::remodel::cluster_radius
 
BooleanOptionKey const basic::options::OptionKeys::remodel::use_clusters
 
BooleanOptionKey const basic::options::OptionKeys::remodel::run_confirmation
 
BooleanOptionKey const basic::options::OptionKeys::remodel::cluster_on_entire_pose
 
IntegerOptionKey const basic::options::OptionKeys::remodel::dr_cycles
 
IntegerOptionKey const basic::options::OptionKeys::remodel::two_chain_tree
 
IntegerOptionKey const basic::options::OptionKeys::remodel::repeat_structure
 
IntegerOptionKey const basic::options::OptionKeys::remodel::lh_ex_limit
 
StringVectorOptionKey const basic::options::OptionKeys::remodel::lh_filter_string
 
IntegerOptionKey const basic::options::OptionKeys::remodel::lh_cbreak_selection
 
BooleanOptionKey const basic::options::OptionKeys::remodel::lh_closure_filter
 
BooleanOptionKey const basic::options::OptionKeys::remodel::cen_minimize
 
IntegerOptionKey const basic::options::OptionKeys::remodel::core_cutoff
 
IntegerOptionKey const basic::options::OptionKeys::remodel::boundary_cutoff
 
StringOptionKey const basic::options::OptionKeys::remodel::coreAA
 
StringOptionKey const basic::options::OptionKeys::remodel::boundaryAA
 
StringOptionKey const basic::options::OptionKeys::remodel::surfaceAA
 
BooleanOptionKey const basic::options::OptionKeys::remodel::design_around_ligand
 
BooleanOptionKey const basic::options::OptionKeys::remodel::move_ligand
 
BooleanOptionKey const basic::options::OptionKeys::remodel::resclass_by_sasa
 
RealOptionKey const basic::options::OptionKeys::remodel::helical_rise
 
RealOptionKey const basic::options::OptionKeys::remodel::helical_radius
 
RealOptionKey const basic::options::OptionKeys::remodel::helical_omega
 
RealVectorOptionKey const basic::options::OptionKeys::remodel::filter_rise
 
RealVectorOptionKey const basic::options::OptionKeys::remodel::filter_radius
 
RealVectorOptionKey const basic::options::OptionKeys::remodel::filter_omega
 
RealOptionKey const basic::options::OptionKeys::remodel::COM_sd
 
RealOptionKey const basic::options::OptionKeys::remodel::COM_tolerance
 
RealOptionKey const basic::options::OptionKeys::remodel::vdw
 
RealOptionKey const basic::options::OptionKeys::remodel::rama
 
RealOptionKey const basic::options::OptionKeys::remodel::cbeta
 
RealOptionKey const basic::options::OptionKeys::remodel::cenpack
 
RealOptionKey const basic::options::OptionKeys::remodel::rg_local
 
RealOptionKey const basic::options::OptionKeys::remodel::hb_lrbb
 
RealOptionKey const basic::options::OptionKeys::remodel::hb_srbb
 
RealOptionKey const basic::options::OptionKeys::remodel::rg
 
RealOptionKey const basic::options::OptionKeys::remodel::rsigma
 
RealOptionKey const basic::options::OptionKeys::remodel::ss_pair
 
BooleanOptionKey const basic::options::OptionKeys::remodel::build_disulf
 
RealOptionKey const basic::options::OptionKeys::remodel::match_rt_limit
 
IntegerVectorOptionKey const basic::options::OptionKeys::remodel::disulf_landing_range
 
BooleanOptionKey const basic::options::OptionKeys::remodel::rank_by_bsasa
 
BooleanOptionKey const basic::options::OptionKeys::remodel::staged_sampling::staged_sampling
 
StringOptionKey const basic::options::OptionKeys::remodel::staged_sampling::loop_9mer_score_file
 
StringOptionKey const basic::options::OptionKeys::remodel::staged_sampling::loop_3mer_score_file
 
StringOptionKey const basic::options::OptionKeys::remodel::staged_sampling::all_9mer_score_file
 
StringOptionKey const basic::options::OptionKeys::remodel::staged_sampling::all_3mer_score_file
 
IntegerOptionKey const basic::options::OptionKeys::remodel::staged_sampling::loop_9mer_cycles
 
IntegerOptionKey const basic::options::OptionKeys::remodel::staged_sampling::loop_3mer_cycles
 
IntegerOptionKey const basic::options::OptionKeys::remodel::staged_sampling::all_9mer_cycles
 
IntegerOptionKey const basic::options::OptionKeys::remodel::staged_sampling::all_3mer_cycles
 
BooleanOptionKey const basic::options::OptionKeys::remodel::staged_sampling::fa_mode
 
BooleanOptionKey const basic::options::OptionKeys::remodel::staged_sampling::fa_relax_moves
 
BooleanOptionKey const basic::options::OptionKeys::remodel::staged_sampling::loop_btw_parametric_components
 
BooleanOptionKey const basic::options::OptionKeys::remodel::staged_sampling::pre_centroid
 
BooleanOptionKey const basic::options::OptionKeys::remodel::staged_sampling::sample_over_loops
 
BooleanOptionKey const basic::options::OptionKeys::remodel::staged_sampling::small_moves
 
StringOptionKey const basic::options::OptionKeys::remodel::staged_sampling::starting_sequence
 
FileOptionKey const basic::options::OptionKeys::remodel::staged_sampling::starting_pdb
 
StringOptionKey const basic::options::OptionKeys::remodel::staged_sampling::starting_non_canonical
 
BooleanOptionKey const basic::options::OptionKeys::remodel::staged_sampling::start_w_ideal_helices
 
BooleanOptionKey const basic::options::OptionKeys::remodel::staged_sampling::sym_move
 
FileOptionKey const basic::options::OptionKeys::remodel::staged_sampling::residues_to_sample
 
BooleanOptionKey const basic::options::OptionKeys::remodel::staged_sampling::require_frags_match_blueprint
 
BooleanOptionKey const basic::options::OptionKeys::remodel::domainFusion::domainFusion
 
FileOptionKey const basic::options::OptionKeys::remodel::domainFusion::insert_segment_from_pdb
 
FileOptionKey const basic::options::OptionKeys::remodel::domainFusion::insert_segment2_from_pdb
 
BooleanOptionKey const basic::options::OptionKeys::remodel::design::design
 
BooleanOptionKey const basic::options::OptionKeys::remodel::design::no_design
 
BooleanOptionKey const basic::options::OptionKeys::remodel::design::design_all
 
BooleanOptionKey const basic::options::OptionKeys::remodel::design::allow_rare_aro_chi
 
BooleanOptionKey const basic::options::OptionKeys::remodel::design::skip_partial
 
BooleanOptionKey const basic::options::OptionKeys::remodel::design::design_neighbors
 
BooleanOptionKey const basic::options::OptionKeys::remodel::design::find_neighbors
 
BooleanOptionKey const basic::options::OptionKeys::remodel::design::include_current
 
BooleanOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::RemodelLoopMover
 
RealOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::max_linear_chainbreak
 
BooleanOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::randomize_loops
 
BooleanOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::use_loop_hash
 
FileOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::set_segment
 
IntegerOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::allowed_closure_attempts
 
IntegerOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::loophash_cycles
 
IntegerOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::simultaneous_cycles
 
IntegerOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::independent_cycles
 
IntegerOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::boost_closure_cycles
 
RealOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::threshold_for_boost_closure
 
IntegerOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::force_cutting_index
 
BooleanOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::force_cutting_N
 
BooleanOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::bypass_closure
 
BooleanOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::cyclic_peptide
 
RealOptionKey const basic::options::OptionKeys::remodel::RemodelLoopMover::temperature
 

Detailed Description

basic::options::OptionKeys collection

Author
Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)
James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)