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basic::options::OptionKeys::abinitio Namespace Reference

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Variables

BooleanOptionKey const abinitio
 
BooleanOptionKey const membrane
 
BooleanOptionKey const use_loophash_filter
 
RealOptionKey const loophash_filter_acceptance_rate
 
FileOptionKey const kill_hairpins
 
RealOptionKey const kill_hairpins_frequency
 
BooleanOptionKey const smooth_cycles_only
 
BooleanOptionKey const relax
 
BooleanOptionKey const final_clean_relax
 
BooleanOptionKey const fastrelax
 
BooleanOptionKey const multifastrelax
 
BooleanOptionKey const debug
 
BooleanOptionKey const clear_pose_cache
 
BooleanOptionKey const explicit_pdb_debug
 
BooleanOptionKey const use_filters
 
RealOptionKey const increase_cycles
 
IntegerOptionKey const number_3mer_frags
 
IntegerOptionKey const number_9mer_frags
 
RealOptionKey const temperature
 
RealOptionKey const rg_reweight
 
RealOptionKey const rsd_wt_helix
 
RealOptionKey const rsd_wt_strand
 
RealOptionKey const rsd_wt_loop
 
BooleanOptionKey const skip_convergence_check
 
FileVectorOptionKey const stage1_patch
 
FileVectorOptionKey const stage2_patch
 
FileVectorOptionKey const stage3a_patch
 
FileVectorOptionKey const stage3b_patch
 
FileVectorOptionKey const stage4_patch
 
FileVectorOptionKey const stage5_patch
 
BooleanOptionKey const steal_3mers
 
BooleanOptionKey const steal_9mers
 
BooleanOptionKey const no_write_failures
 
BooleanOptionKey const relax_failures
 
BooleanOptionKey const relax_with_jumps
 
BooleanOptionKey const process_store
 
IntegerVectorOptionKey const fix_residues_to_native
 
BooleanOptionKey const return_full_atom
 
BooleanOptionKey const detect_disulfide_before_relax
 
BooleanOptionKey const close_loops
 
BooleanOptionKey const bGDT
 
BooleanOptionKey const dump_frags
 
BooleanOptionKey const jdist_rerun
 
RealOptionKey const perturb
 
BooleanOptionKey const rerun
 
IntegerVectorOptionKey const rmsd_residues
 
BooleanOptionKey const start_native
 
BooleanOptionKey const cyclic_peptide
 
BooleanOptionKey const debug_structures
 
FileOptionKey const log_frags
 
BooleanOptionKey const only_stage1
 
RealOptionKey const end_bias
 
BooleanOptionKey const apply_end_bias
 
IntegerOptionKey const symmetry_residue
 
RealOptionKey const vdw_weight_stage1
 
BooleanOptionKey const override_vdw_all_stages
 
IntegerVectorOptionKey const recover_low_in_stages
 
IntegerVectorOptionKey const skip_stages
 
BooleanOptionKey const close_chbrk
 
BooleanOptionKey const include_stage5
 
BooleanOptionKey const close_loops_by_idealizing
 
BooleanOptionKey const optimize_cutpoints_using_kic
 
IntegerOptionKey const optimize_cutpoints_margin
 

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::abinitio::abinitio

Referenced by add_rosetta_options_4().

BooleanOptionKey const basic::options::OptionKeys::abinitio::apply_end_bias

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::bGDT

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::clear_pose_cache

Referenced by add_rosetta_options_4().

BooleanOptionKey const basic::options::OptionKeys::abinitio::close_chbrk

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::close_loops

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::close_loops_by_idealizing

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::cyclic_peptide

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::debug

Referenced by add_rosetta_options_4().

BooleanOptionKey const basic::options::OptionKeys::abinitio::debug_structures

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::detect_disulfide_before_relax

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::dump_frags

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::abinitio::end_bias

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::explicit_pdb_debug

Referenced by add_rosetta_options_4().

BooleanOptionKey const basic::options::OptionKeys::abinitio::fastrelax
BooleanOptionKey const basic::options::OptionKeys::abinitio::final_clean_relax

Referenced by add_rosetta_options_4().

IntegerVectorOptionKey const basic::options::OptionKeys::abinitio::fix_residues_to_native

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::include_stage5

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::abinitio::increase_cycles

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::jdist_rerun

Referenced by add_rosetta_options_5().

FileOptionKey const basic::options::OptionKeys::abinitio::kill_hairpins

Referenced by add_rosetta_options_4().

RealOptionKey const basic::options::OptionKeys::abinitio::kill_hairpins_frequency

Referenced by add_rosetta_options_4().

FileOptionKey const basic::options::OptionKeys::abinitio::log_frags

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::abinitio::loophash_filter_acceptance_rate

Referenced by add_rosetta_options_4().

BooleanOptionKey const basic::options::OptionKeys::abinitio::membrane
BooleanOptionKey const basic::options::OptionKeys::abinitio::multifastrelax

Referenced by add_rosetta_options_4().

BooleanOptionKey const basic::options::OptionKeys::abinitio::no_write_failures

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::abinitio::number_3mer_frags

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::abinitio::number_9mer_frags

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::only_stage1

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::abinitio::optimize_cutpoints_margin

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::optimize_cutpoints_using_kic

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::override_vdw_all_stages

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::abinitio::perturb

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::process_store

Referenced by add_rosetta_options_5().

IntegerVectorOptionKey const basic::options::OptionKeys::abinitio::recover_low_in_stages

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::relax
BooleanOptionKey const basic::options::OptionKeys::abinitio::relax_failures

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::relax_with_jumps

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::rerun

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::return_full_atom

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::abinitio::rg_reweight

Referenced by add_rosetta_options_5().

IntegerVectorOptionKey const basic::options::OptionKeys::abinitio::rmsd_residues
RealOptionKey const basic::options::OptionKeys::abinitio::rsd_wt_helix

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::abinitio::rsd_wt_loop

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::abinitio::rsd_wt_strand

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::skip_convergence_check

Referenced by add_rosetta_options_5().

IntegerVectorOptionKey const basic::options::OptionKeys::abinitio::skip_stages

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::smooth_cycles_only

Referenced by add_rosetta_options_4().

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage1_patch

Referenced by add_rosetta_options_5().

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage2_patch

Referenced by add_rosetta_options_5().

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage3a_patch

Referenced by add_rosetta_options_5().

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage3b_patch

Referenced by add_rosetta_options_5().

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage4_patch

Referenced by add_rosetta_options_5().

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage5_patch

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::start_native

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::steal_3mers

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::steal_9mers

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::abinitio::symmetry_residue

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::abinitio::temperature

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::use_filters

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::abinitio::use_loophash_filter

Referenced by add_rosetta_options_4().

RealOptionKey const basic::options::OptionKeys::abinitio::vdw_weight_stage1

Referenced by add_rosetta_options_5().