Rosetta  2020.37
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edensity Namespace Reference

Functions

BooleanOptionKey const edensity ("edensity")
 
BooleanOptionKey const debug ("edensity:debug")
 
StringOptionKey const mapfile ("edensity:mapfile")
 
RealOptionKey const mapreso ("edensity:mapreso")
 
RealOptionKey const grid_spacing ("edensity:grid_spacing")
 
RealOptionKey const centroid_density_mass ("edensity:centroid_density_mass")
 
IntegerOptionKey const sliding_window ("edensity:sliding_window")
 
BooleanOptionKey const cryoem_scatterers ("edensity:cryoem_scatterers")
 
RealOptionKey const force_apix ("edensity:force_apix")
 
RealOptionKey const fastdens_wt ("edensity:fastdens_wt")
 
RealVectorOptionKey const fastdens_params ("edensity:fastdens_params")
 
BooleanOptionKey const legacy_fastdens_score ("edensity:legacy_fastdens_score")
 
RealOptionKey const sliding_window_wt ("edensity:sliding_window_wt")
 
BooleanOptionKey const score_sliding_window_context ("edensity:score_sliding_window_context")
 
RealOptionKey const whole_structure_ca_wt ("edensity:whole_structure_ca_wt")
 
RealOptionKey const whole_structure_allatom_wt ("edensity:whole_structure_allatom_wt")
 
BooleanOptionKey const debug_derivatives ("edensity:debug_derivatives")
 
StringOptionKey const realign ("edensity:realign")
 
StringOptionKey const membrane_axis ("edensity:membrane_axis")
 
RealOptionKey const atom_mask ("edensity:atom_mask")
 
RealOptionKey const atom_mask_min ("edensity:atom_mask_min")
 
RealOptionKey const ca_mask ("edensity:ca_mask")
 
BooleanOptionKey const score_symm_complex ("edensity:score_symm_complex")
 
RealOptionKey const sc_scaling ("edensity:sc_scaling")
 
IntegerOptionKey const n_kbins ("edensity:n_kbins")
 
BooleanOptionKey const unmask_bb ("edensity:unmask_bb")
 
BooleanOptionKey const render_density ("edensity:render_density")
 

Function Documentation

RealOptionKey const edensity::atom_mask ( "edensity:atom_mask"  )
RealOptionKey const edensity::atom_mask_min ( "edensity:atom_mask_min"  )
RealOptionKey const edensity::ca_mask ( "edensity:ca_mask"  )
RealOptionKey const edensity::centroid_density_mass ( "edensity:centroid_density_mass"  )
BooleanOptionKey const edensity::cryoem_scatterers ( "edensity:cryoem_scatterers"  )
BooleanOptionKey const edensity::debug ( "edensity:debug"  )
BooleanOptionKey const edensity::debug_derivatives ( "edensity:debug_derivatives"  )
BooleanOptionKey const edensity::edensity ( "edensity"  )
RealVectorOptionKey const edensity::fastdens_params ( "edensity:fastdens_params"  )
RealOptionKey const edensity::fastdens_wt ( "edensity:fastdens_wt"  )
RealOptionKey const edensity::force_apix ( "edensity:force_apix"  )
RealOptionKey const edensity::grid_spacing ( "edensity:grid_spacing"  )

Referenced by densityTools().

BooleanOptionKey const edensity::legacy_fastdens_score ( "edensity:legacy_fastdens_score"  )
StringOptionKey const edensity::mapfile ( "edensity:mapfile"  )
RealOptionKey const edensity::mapreso ( "edensity:mapreso"  )

Referenced by densityTools().

StringOptionKey const edensity::membrane_axis ( "edensity:membrane_axis"  )
IntegerOptionKey const edensity::n_kbins ( "edensity:n_kbins"  )
StringOptionKey const edensity::realign ( "edensity:realign"  )
BooleanOptionKey const edensity::render_density ( "edensity:render_density"  )
RealOptionKey const edensity::sc_scaling ( "edensity:sc_scaling"  )
BooleanOptionKey const edensity::score_sliding_window_context ( "edensity:score_sliding_window_context"  )
BooleanOptionKey const edensity::score_symm_complex ( "edensity:score_symm_complex"  )
IntegerOptionKey const edensity::sliding_window ( "edensity:sliding_window"  )
RealOptionKey const edensity::sliding_window_wt ( "edensity:sliding_window_wt"  )
BooleanOptionKey const edensity::unmask_bb ( "edensity:unmask_bb"  )
RealOptionKey const edensity::whole_structure_allatom_wt ( "edensity:whole_structure_allatom_wt"  )
RealOptionKey const edensity::whole_structure_ca_wt ( "edensity:whole_structure_ca_wt"  )