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in.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces

 basic
 Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
 
 basic::options
 
 basic::options::OptionKeys
 
 basic::options::OptionKeys::in
 
 basic::options::OptionKeys::in::dbms
 
 basic::options::OptionKeys::in::path
 
 basic::options::OptionKeys::in::file
 
 basic::options::OptionKeys::in::rdf
 

Variables

BooleanOptionKey const basic::options::OptionKeys::in::in
 
FileVectorOptionKey const basic::options::OptionKeys::in::fconfig
 
BooleanOptionKey const basic::options::OptionKeys::in::no_fconfig
 
BooleanOptionKey const basic::options::OptionKeys::in::skip_classic_cart_setup
 
BooleanOptionKey const basic::options::OptionKeys::in::skip_new_cart_setup
 
StringOptionKey const basic::options::OptionKeys::in::Ntermini
 
StringOptionKey const basic::options::OptionKeys::in::Ctermini
 
BooleanOptionKey const basic::options::OptionKeys::in::use_truncated_termini
 
BooleanOptionKey const basic::options::OptionKeys::in::ignore_unrecognized_res
 
BooleanOptionKey const basic::options::OptionKeys::in::ignore_waters
 
BooleanOptionKey const basic::options::OptionKeys::in::guarantee_no_DNA
 
BooleanOptionKey const basic::options::OptionKeys::in::add_orbitals
 
BooleanOptionKey const basic::options::OptionKeys::in::show_all_fixes
 
BooleanOptionKey const basic::options::OptionKeys::in::include_sugars
 
BooleanOptionKey const basic::options::OptionKeys::in::include_lipids
 
BooleanOptionKey const basic::options::OptionKeys::in::include_surfaces
 
BooleanOptionKey const basic::options::OptionKeys::in::read_only_ATOM_entries
 
BooleanOptionKey const basic::options::OptionKeys::in::auto_detect_glycan_connections
 
RealOptionKey const basic::options::OptionKeys::in::max_bond_length
 
RealOptionKey const basic::options::OptionKeys::in::min_bond_length
 
RealOptionKey const basic::options::OptionKeys::in::glycan_virtual_offset
 
BooleanOptionKey const basic::options::OptionKeys::in::membrane
 
BooleanOptionKey const basic::options::OptionKeys::in::remember_unrecognized_res
 
BooleanOptionKey const basic::options::OptionKeys::in::remember_unrecognized_water
 
BooleanOptionKey const basic::options::OptionKeys::in::preserve_crystinfo
 
BooleanOptionKey const basic::options::OptionKeys::in::detect_oops
 
BooleanOptionKey const basic::options::OptionKeys::in::detect_disulf
 
RealOptionKey const basic::options::OptionKeys::in::detect_disulf_tolerance
 
BooleanOptionKey const basic::options::OptionKeys::in::constraints_from_link_records
 
BooleanOptionKey const basic::options::OptionKeys::in::auto_setup_metals
 
BooleanOptionKey const basic::options::OptionKeys::in::prevent_auto_setup_metal_bb_variants
 
RealOptionKey const basic::options::OptionKeys::in::metals_detection_LJ_multiplier
 
RealOptionKey const basic::options::OptionKeys::in::metals_distance_constraint_multiplier
 
RealOptionKey const basic::options::OptionKeys::in::metals_angle_constraint_multiplier
 
StringVectorOptionKey const basic::options::OptionKeys::in::name3_property_codes
 
StringVectorOptionKey const basic::options::OptionKeys::in::alternate_3_letter_codes
 
BooleanOptionKey const basic::options::OptionKeys::in::maintain_links
 
FileOptionKey const basic::options::OptionKeys::in::fix_disulf
 
BooleanOptionKey const basic::options::OptionKeys::in::missing_density_to_jump
 
IntegerVectorOptionKey const basic::options::OptionKeys::in::target_residues
 
IntegerVectorOptionKey const basic::options::OptionKeys::in::replonly_residues
 
BooleanOptionKey const basic::options::OptionKeys::in::replonly_loops
 
BooleanOptionKey const basic::options::OptionKeys::in::use_database
 
StringVectorOptionKey const basic::options::OptionKeys::in::select_structures_from_database
 
BooleanOptionKey const basic::options::OptionKeys::in::dbms::dbms
 
StringVectorOptionKey const basic::options::OptionKeys::in::dbms::struct_ids
 
PathVectorOptionKey const basic::options::OptionKeys::in::path::path
 
PathVectorOptionKey const basic::options::OptionKeys::in::path::fragments
 
PathVectorOptionKey const basic::options::OptionKeys::in::path::pdb
 
PathVectorOptionKey const basic::options::OptionKeys::in::path::database
 Permanent solution, add the .params to the minirosetta_database of PyRosetta. More...
 
PathOptionKey const basic::options::OptionKeys::in::path::database_cache_dir
 
BooleanOptionKey const basic::options::OptionKeys::in::file::file
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::s
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::t
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::l
 
FileOptionKey const basic::options::OptionKeys::in::file::job_definition_file
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::list
 
BooleanOptionKey const basic::options::OptionKeys::in::file::srlz
 
BooleanOptionKey const basic::options::OptionKeys::in::file::srlz_override
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::screening_list
 
FileOptionKey const basic::options::OptionKeys::in::file::screening_job_file
 
BooleanOptionKey const basic::options::OptionKeys::in::file::shuffle_screening_jobs
 
FileOptionKey const basic::options::OptionKeys::in::file::native
 
FileOptionKey const basic::options::OptionKeys::in::file::torsion_bin_probs
 
FileOptionKey const basic::options::OptionKeys::in::file::PCS_frag_cst
 
FileOptionKey const basic::options::OptionKeys::in::file::talos_phi_psi
 
FileOptionKey const basic::options::OptionKeys::in::file::talos_cs
 
FileOptionKey const basic::options::OptionKeys::in::file::ambig_talos_cs_A
 
FileOptionKey const basic::options::OptionKeys::in::file::ambig_talos_cs_B
 
IntegerVectorOptionKey const basic::options::OptionKeys::in::file::native_exclude_res
 
BooleanOptionKey const basic::options::OptionKeys::in::file::no_detect_pseudobonds
 
StringVectorOptionKey const basic::options::OptionKeys::in::file::tags
 
StringVectorOptionKey const basic::options::OptionKeys::in::file::user_tags
 
FileOptionKey const basic::options::OptionKeys::in::file::tagfile
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::frag_files
 
StringVectorOptionKey const basic::options::OptionKeys::in::file::remap_pdb_atom_names_for
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::extra_res
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::extra_res_fa
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::extra_res_mol
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::extra_res_mmCIF
 
BooleanOptionKey const basic::options::OptionKeys::in::file::load_PDB_components
 
StringOptionKey const basic::options::OptionKeys::in::file::PDB_components_directory
 
StringVectorOptionKey const basic::options::OptionKeys::in::file::PDB_components_overrides
 
BooleanOptionKey const basic::options::OptionKeys::in::file::check_all_PDB_components
 
StringOptionKey const basic::options::OptionKeys::in::file::extra_res_database
 
StringOptionKey const basic::options::OptionKeys::in::file::extra_res_pq_schema
 
StringOptionKey const basic::options::OptionKeys::in::file::extra_res_database_mode
 
FileOptionKey const basic::options::OptionKeys::in::file::extra_res_database_resname_list
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::extra_res_cen
 
PathVectorOptionKey const basic::options::OptionKeys::in::file::extra_res_path
 
PathVectorOptionKey const basic::options::OptionKeys::in::file::extra_rot_lib_path
 
PathVectorOptionKey const basic::options::OptionKeys::in::file::override_rot_lib_path
 
PathVectorOptionKey const basic::options::OptionKeys::in::file::extra_res_batch_path
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::extra_patch_fa
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::extra_patch_cen
 
StringOptionKey const basic::options::OptionKeys::in::file::frag3
 
StringOptionKey const basic::options::OptionKeys::in::file::frag9
 
StringOptionKey const basic::options::OptionKeys::in::file::fragA
 
StringOptionKey const basic::options::OptionKeys::in::file::fragB
 
StringOptionKey const basic::options::OptionKeys::in::file::surface_vectors
 
StringOptionKey const basic::options::OptionKeys::in::file::xyz
 
BooleanOptionKey const basic::options::OptionKeys::in::file::keep_input_scores
 
BooleanOptionKey const basic::options::OptionKeys::in::file::lazy_silent
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::silent
 
BooleanOptionKey const basic::options::OptionKeys::in::file::force_silent_bitflip_on_read
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::atom_tree_diff
 
StringOptionKey const basic::options::OptionKeys::in::file::zip
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::boinc_wu_zip
 
BooleanOptionKey const basic::options::OptionKeys::in::file::fullatom
 
BooleanOptionKey const basic::options::OptionKeys::in::file::centroid_input
 
BooleanOptionKey const basic::options::OptionKeys::in::file::centroid
 
BooleanOptionKey const basic::options::OptionKeys::in::file::assign_gasteiger_atom_types
 
StringOptionKey const basic::options::OptionKeys::in::file::treat_residues_in_these_chains_as_separate_chemical_entities
 
StringOptionKey const basic::options::OptionKeys::in::file::residue_type_set
 
FileOptionKey const basic::options::OptionKeys::in::file::pca
 
RealOptionKey const basic::options::OptionKeys::in::file::silent_energy_cut
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::silent_list
 
BooleanOptionKey const basic::options::OptionKeys::in::file::silent_renumber
 
StringOptionKey const basic::options::OptionKeys::in::file::silent_struct_type
 
BooleanOptionKey const basic::options::OptionKeys::in::file::silent_read_through_errors
 
StringOptionKey const basic::options::OptionKeys::in::file::silent_score_prefix
 
IntegerOptionKey const basic::options::OptionKeys::in::file::silent_select_random
 
IntegerOptionKey const basic::options::OptionKeys::in::file::silent_select_range_start
 
IntegerOptionKey const basic::options::OptionKeys::in::file::silent_select_range_mul
 
IntegerOptionKey const basic::options::OptionKeys::in::file::silent_select_range_len
 
BooleanOptionKey const basic::options::OptionKeys::in::file::skip_failed_simulations
 
StringVectorOptionKey const basic::options::OptionKeys::in::file::silent_scores_wanted
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::fasta
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::pssm
 
StringVectorOptionKey const basic::options::OptionKeys::in::file::seq
 
FileOptionKey const basic::options::OptionKeys::in::file::checkpoint
 
FileOptionKey const basic::options::OptionKeys::in::file::binary_chk
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::alignment
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::alignment2
 
FileOptionKey const basic::options::OptionKeys::in::file::rama2b_map
 
FileOptionKey const basic::options::OptionKeys::in::file::psipred_ss2
 
FileOptionKey const basic::options::OptionKeys::in::file::dssp
 
BooleanOptionKey const basic::options::OptionKeys::in::file::fail_on_bad_hbond
 
FileOptionKey const basic::options::OptionKeys::in::file::movemap
 
BooleanOptionKey const basic::options::OptionKeys::in::file::repair_sidechains
 
BooleanOptionKey const basic::options::OptionKeys::in::file::no_binary_dunlib
 
IntegerOptionKey const basic::options::OptionKeys::in::file::extended_pose
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::template_pdb
 
FileOptionKey const basic::options::OptionKeys::in::file::template_silent
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::rdc
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::csa
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::dc
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::burial
 
FileOptionKey const basic::options::OptionKeys::in::file::hrf_ms_labeling
 
FileVectorOptionKey const basic::options::OptionKeys::in::file::vall
 
BooleanOptionKey const basic::options::OptionKeys::in::file::rescore
 
StringOptionKey const basic::options::OptionKeys::in::file::spanfile
 
StringOptionKey const basic::options::OptionKeys::in::file::lipofile
 
StringOptionKey const basic::options::OptionKeys::in::file::HDX
 
RealOptionKey const basic::options::OptionKeys::in::file::d2h_sa_reweight
 
FileOptionKey const basic::options::OptionKeys::in::file::sucker_params
 
FileOptionKey const basic::options::OptionKeys::in::file::fold_tree
 
BooleanOptionKey const basic::options::OptionKeys::in::file::obey_ENDMDL
 
BooleanOptionKey const basic::options::OptionKeys::in::file::new_chain_order
 
FileOptionKey const basic::options::OptionKeys::in::file::ddg_predictions_file
 
ResidueChainVectorOptionKey const basic::options::OptionKeys::in::file::input_res
 
IntegerVectorOptionKey const basic::options::OptionKeys::in::file::minimize_res
 
StringOptionKey const basic::options::OptionKeys::in::file::md_schfile
 
FileOptionKey const basic::options::OptionKeys::in::file::native_contacts
 
BooleanOptionKey const basic::options::OptionKeys::in::rdf::rdf
 
BooleanOptionKey const basic::options::OptionKeys::in::rdf::sep_bb_ss
 

Detailed Description

basic::options::OptionKeys collection

Author
Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)
James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)