Rosetta  2020.11
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Functions
out::file Namespace Reference

Functions

BooleanOptionKey const file ("out:file")
 
StringOptionKey const o ("out:file:o")
 
FileOptionKey const design_contrast ("out:file:design_contrast")
 
StringOptionKey const residue_type_set ("out:file:residue_type_set")
 
BooleanOptionKey const srlz ("out:file:srlz")
 
StringOptionKey const atom_tree_diff ("out:file:atom_tree_diff")
 
IntegerOptionKey const atom_tree_diff_bb ("out:file:atom_tree_diff_bb")
 
IntegerOptionKey const atom_tree_diff_sc ("out:file:atom_tree_diff_sc")
 
IntegerOptionKey const atom_tree_diff_bl ("out:file:atom_tree_diff_bl")
 
StringOptionKey const alignment ("out:file:alignment")
 
StringOptionKey const score_only ("out:file:score_only")
 
StringOptionKey const scorefile ("out:file:scorefile")
 
StringOptionKey const scorefile_format ("out:file:scorefile_format")
 
StringOptionKey const silent ("out:file:silent")
 
StringOptionKey const silent_struct_type ("out:file:silent_struct_type")
 
BooleanOptionKey const silent_print_all_score_headers ("out:file:silent_print_all_score_headers")
 
BooleanOptionKey const raw ("out:file:raw")
 
BooleanOptionKey const weight_silent_scores ("out:file:weight_silent_scores")
 
BooleanOptionKey const silent_preserve_H ("out:file:silent_preserve_H")
 
BooleanOptionKey const fullatom ("out:file:fullatom")
 
BooleanOptionKey const suppress_zero_occ_pdb_output ("out:file:suppress_zero_occ_pdb_output")
 
BooleanOptionKey const output_ligands_as_separate_chains ("out:file:output_ligands_as_separate_chains")
 
BooleanOptionKey const output_virtual ("out:file:output_virtual")
 
BooleanOptionKey const output_virtual_zero_occ ("out:file:output_virtual_zero_occ")
 
BooleanOptionKey const no_chainend_ter ("out:file:no_chainend_ter")
 
BooleanOptionKey const no_output_cen ("out:file:no_output_cen")
 
BooleanOptionKey const output_orbitals ("out:file:output_orbitals")
 
BooleanOptionKey const renumber_pdb ("out:file:renumber_pdb")
 
BooleanOptionKey const pdb_parents ("out:file:pdb_parents")
 
BooleanOptionKey const per_chain_renumbering ("out:file:per_chain_renumbering")
 
BooleanOptionKey const output_secondary_structure ("out:file:output_secondary_structure")
 
BooleanOptionKey const do_not_autoassign_SS ("out:file:do_not_autoassign_SS")
 
BooleanOptionKey const output_torsions ("out:file:output_torsions")
 
BooleanOptionKey const use_occurrence_data ("out:file:use_occurrence_data")
 
BooleanOptionKey const pdb_comments ("out:file:pdb_comments")
 
BooleanOptionKey const force_nonideal_structure ("out:file:force_nonideal_structure")
 
StringOptionKey const set_pdb_author ("out:file:set_pdb_author")
 
BooleanOptionKey const write_pdb_title_section_records ("out:file:write_pdb_title_section_records")
 
BooleanOptionKey const write_pdb_link_records ("out:file:write_pdb_link_records")
 
BooleanOptionKey const use_pdb_format_HETNAM_records ("out:file:use_pdb_format_HETNAM_records")
 
BooleanOptionKey const write_pdb_parametric_info ("out:file:write_pdb_parametric_info")
 
BooleanOptionKey const write_glycan_pdb_codes ("out:file:write_glycan_pdb_codes")
 
BooleanOptionKey const write_seqres_records ("out:file:write_seqres_records")
 
BooleanOptionKey const output_pose_energies_table ("out:file:output_pose_energies_table")
 
BooleanOptionKey const output_pose_cache_data ("out:file:output_pose_cache_data")
 
BooleanOptionKey const output_pose_fold_tree ("out:file:output_pose_fold_tree")
 
BooleanOptionKey const output_only_asymmetric_unit ("out:file:output_only_asymmetric_unit")
 
BooleanOptionKey const cif_extra_data_separate_file ("out:file:cif_extra_data_separate_file")
 
BooleanOptionKey const dont_rewrite_dunbrack_database ("out:file:dont_rewrite_dunbrack_database")
 
StringOptionKey const frag_prefix ("out:file:frag_prefix")
 
BooleanOptionKey const no_extra_sdf_data ("out:file:no_extra_sdf_data")
 
BooleanOptionKey const no_scores_in_pdb ("out:file:no_scores_in_pdb")
 

Function Documentation

StringOptionKey const out::file::alignment ( "out:file:alignment"  )

Referenced by main().

StringOptionKey const out::file::atom_tree_diff ( "out:file:atom_tree_diff"  )
IntegerOptionKey const out::file::atom_tree_diff_bb ( "out:file:atom_tree_diff_bb"  )
IntegerOptionKey const out::file::atom_tree_diff_bl ( "out:file:atom_tree_diff_bl"  )
IntegerOptionKey const out::file::atom_tree_diff_sc ( "out:file:atom_tree_diff_sc"  )
BooleanOptionKey const out::file::cif_extra_data_separate_file ( "out:file:cif_extra_data_separate_file"  )
FileOptionKey const out::file::design_contrast ( "out:file:design_contrast"  )

Referenced by main().

BooleanOptionKey const out::file::do_not_autoassign_SS ( "out:file:do_not_autoassign_SS"  )
BooleanOptionKey const out::file::dont_rewrite_dunbrack_database ( "out:file:dont_rewrite_dunbrack_database"  )
BooleanOptionKey const out::file::file ( "out:file"  )
BooleanOptionKey const out::file::force_nonideal_structure ( "out:file:force_nonideal_structure"  )
StringOptionKey const out::file::frag_prefix ( "out:file:frag_prefix"  )

Referenced by register_options().

BooleanOptionKey const out::file::fullatom ( "out:file:fullatom"  )
BooleanOptionKey const out::file::no_chainend_ter ( "out:file:no_chainend_ter"  )

Referenced by main().

BooleanOptionKey const out::file::no_extra_sdf_data ( "out:file:no_extra_sdf_data"  )
BooleanOptionKey const out::file::no_output_cen ( "out:file:no_output_cen"  )
BooleanOptionKey const out::file::no_scores_in_pdb ( "out:file:no_scores_in_pdb"  )
StringOptionKey const out::file::o ( "out:file:o"  )
BooleanOptionKey const out::file::output_ligands_as_separate_chains ( "out:file:output_ligands_as_separate_chains"  )
BooleanOptionKey const out::file::output_only_asymmetric_unit ( "out:file:output_only_asymmetric_unit"  )
BooleanOptionKey const out::file::output_orbitals ( "out:file:output_orbitals"  )
BooleanOptionKey const out::file::output_pose_cache_data ( "out:file:output_pose_cache_data"  )
BooleanOptionKey const out::file::output_pose_energies_table ( "out:file:output_pose_energies_table"  )
BooleanOptionKey const out::file::output_pose_fold_tree ( "out:file:output_pose_fold_tree"  )
BooleanOptionKey const out::file::output_secondary_structure ( "out:file:output_secondary_structure"  )
BooleanOptionKey const out::file::output_torsions ( "out:file:output_torsions"  )
BooleanOptionKey const out::file::output_virtual ( "out:file:output_virtual"  )
BooleanOptionKey const out::file::output_virtual_zero_occ ( "out:file:output_virtual_zero_occ"  )
BooleanOptionKey const out::file::pdb_comments ( "out:file:pdb_comments"  )
BooleanOptionKey const out::file::pdb_parents ( "out:file:pdb_parents"  )
BooleanOptionKey const out::file::per_chain_renumbering ( "out:file:per_chain_renumbering"  )
BooleanOptionKey const out::file::raw ( "out:file:raw"  )
BooleanOptionKey const out::file::renumber_pdb ( "out:file:renumber_pdb"  )
StringOptionKey const out::file::residue_type_set ( "out:file:residue_type_set"  )

Referenced by main().

StringOptionKey const out::file::score_only ( "out:file:score_only"  )
StringOptionKey const out::file::scorefile ( "out:file:scorefile"  )

Referenced by main().

StringOptionKey const out::file::scorefile_format ( "out:file:scorefile_format"  )
StringOptionKey const out::file::set_pdb_author ( "out:file:set_pdb_author"  )
StringOptionKey const out::file::silent ( "out:file:silent"  )
BooleanOptionKey const out::file::silent_preserve_H ( "out:file:silent_preserve_H"  )
BooleanOptionKey const out::file::silent_print_all_score_headers ( "out:file:silent_print_all_score_headers"  )
StringOptionKey const out::file::silent_struct_type ( "out:file:silent_struct_type"  )
BooleanOptionKey const out::file::srlz ( "out:file:srlz"  )
BooleanOptionKey const out::file::suppress_zero_occ_pdb_output ( "out:file:suppress_zero_occ_pdb_output"  )

Referenced by main().

BooleanOptionKey const out::file::use_occurrence_data ( "out:file:use_occurrence_data"  )
BooleanOptionKey const out::file::use_pdb_format_HETNAM_records ( "out:file:use_pdb_format_HETNAM_records"  )
BooleanOptionKey const out::file::weight_silent_scores ( "out:file:weight_silent_scores"  )
BooleanOptionKey const out::file::write_glycan_pdb_codes ( "out:file:write_glycan_pdb_codes"  )
BooleanOptionKey const out::file::write_pdb_link_records ( "out:file:write_pdb_link_records"  )
BooleanOptionKey const out::file::write_pdb_parametric_info ( "out:file:write_pdb_parametric_info"  )
BooleanOptionKey const out::file::write_pdb_title_section_records ( "out:file:write_pdb_title_section_records"  )
BooleanOptionKey const out::file::write_seqres_records ( "out:file:write_seqres_records"  )