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Functions | Variables
test.Workshop4test Namespace Reference

Functions

def random_move
 

Variables

int PHI = 0
 
int PSI = 1
 
float kT = 1.0
 
tuple last_pose = Pose()
 
tuple low_pose = Pose()
 
tuple p = pose_from_sequence("AAAAAAAAAA", "fa_standard")
 
tuple pmm = PyMOLMover()
 
tuple score = ScoreFunction()
 
tuple low_score = score(p)
 
tuple last_score = score(p)
 
tuple new_score = score(p)
 
 deltaE = new_score-last_score
 
tuple P = math.exp(-deltaE/kT)
 
tuple roll = random.uniform(0.0, 1.0)
 
tuple ras = pose_from_file("../test/data/workshops/6Q21.clean.pdb")
 
tuple score2 = get_score_function()
 
tuple switch = SwitchResidueTypeSetMover("centroid")
 
tuple score3 = create_score_function("score3")
 
tuple switch2 = SwitchResidueTypeSetMover("fa_standard")
 
tuple fragset = core.fragment.ConstantLengthFragSet(3)
 
tuple movemap = MoveMap()
 
tuple mover_3mer = protocols.simple_moves.ClassicFragmentMover(fragset, movemap)
 
tuple pose = pose_from_sequence("RFPMMSTFKVLLCGAVLSRIDAG", "centroid")
 

Function Documentation

def test.Workshop4test.random_move (   pose)

Variable Documentation

test.Workshop4test.deltaE = new_score-last_score
tuple test.Workshop4test.fragset = core.fragment.ConstantLengthFragSet(3)
float test.Workshop4test.kT = 1.0
tuple test.Workshop4test.last_pose = Pose()
tuple test.Workshop4test.last_score = score(p)
tuple test.Workshop4test.low_pose = Pose()
test.Workshop4test.low_score = score(p)
tuple test.Workshop4test.movemap = MoveMap()
tuple test.Workshop4test.mover_3mer = protocols.simple_moves.ClassicFragmentMover(fragset, movemap)
tuple test.Workshop4test.new_score = score(p)
tuple test.Workshop4test.p = pose_from_sequence("AAAAAAAAAA", "fa_standard")

Referenced by binder.add_relevant_include_for_decl(), add_rosetta_options_2(), binder.bind_function(), utility.down_cast(), ObjexxFCL::format.F(), basic::resource_manager::locator::FileStream.FileStream(), ObjexxFCL.fixed_Fstring_of(), ObjexxFCL.fixed_string_of(), fmt::BasicFormatter< CharType, ArgFormatter >.format(), binder.function_arguments_for_py_overload(), ObjexxFCL.general_Fstring_of(), ObjexxFCL.general_string_of(), fmt::BasicWriter< Char >.get(), numeric::interpolation::spline::SplineGenerator.get_interpolator(), get_max_and_intervals(), harvest_scores(), numeric.hsv_to_rgb(), numeric::geometry::hashing::SixDOffsetTree.init(), numeric::interpolation::InterpolatedPotential< N >.InterpolatedPotential(), binder.is_bindable(), numeric::fourier.kf_bfly_generic(), numeric::fourier.kf_factor(), numeric::fourier.kf_work(), numeric::statistics.kl_divergence(), numeric::geometry::hashing::SixDOffsetTree.lookup(), main(), rosetta_binders::utility_vector_binder< Vector, L, T, Allocator >.maybe_has_equal_operator(), merge_motifs(), minimize_with_constraints(), fmt::BufferedFile.operator Proxy(), fmt::File.operator Proxy(), numeric::interpolation::TempStruct< T, N >.operator()(), numeric::interpolation::TempStruct< T, 1 >.operator()(), numeric.operator<<(), numeric::sphericalVector< typename >.operator=(), numeric::xyzTriple< typename >.operator=(), numeric::xyzVector< core::Real >.operator=(), fmt::BasicWriter< Char >.prepare_int_buffer(), ObjexxFCL::CArrayP< typename >.Proxy(), basic::sampling::orientations::QuaternionGrid.QuaternionGrid(), numeric.read_probabilities_or_die(), numeric::MathNTensor< double, 2 >.replace_layer(), numeric::geometry::BoundingBox< Vector >.reset(), myMC.roll(), ObjexxFCL.scientific_Fstring_of(), ObjexxFCL.scientific_string_of(), numeric::geometry::BoundingBox< Vector >.set_lower(), numeric::geometry::BoundingBox< Vector >.set_upper(), numeric::fourier::SHT.setup_Pmls(), sigmoid_train(), binder.simplify_std_class_name(), binder::Context.sort_binders(), numeric::interpolation::spline.spline_second_derivative(), binder.standard_name(), utility.strip(), svm_load_model(), svm_predict_values(), svm_save_model(), svm_train(), utility::json_spirit.to_str(), numeric::interpolation::spline::PolycubicSpline< N >.train(), numeric::kinematic_closure.triaxialCoefficients(), numeric::kinematic_closure::radians.triaxialCoefficients(), fmt::BasicWriter< Char >.write_double(), and fmt::BasicWriter< Char >.write_int().

tuple test.Workshop4test.P = math.exp(-deltaE/kT)
int test.Workshop4test.PHI = 0
tuple test.Workshop4test.pmm = PyMOLMover()
tuple test.Workshop4test.pose = pose_from_sequence("RFPMMSTFKVLLCGAVLSRIDAG", "centroid")
int test.Workshop4test.PSI = 1
tuple test.Workshop4test.ras = pose_from_file("../test/data/workshops/6Q21.clean.pdb")
tuple test.Workshop4test.roll = random.uniform(0.0, 1.0)
tuple test.Workshop4test.score = ScoreFunction()
tuple test.Workshop4test.score2 = get_score_function()
tuple test.Workshop4test.score3 = create_score_function("score3")
tuple test.Workshop4test.switch = SwitchResidueTypeSetMover("centroid")
tuple test.Workshop4test.switch2 = SwitchResidueTypeSetMover("fa_standard")