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utility::options::OptionKeys::options Namespace Reference

Option display option keys. More...

Namespaces

 table
 

Variables

BooleanOptionKey const options ("options")
 
BooleanOptionKey const user ("options:user")
 
BooleanOptionKey const all ("options:all")
 
BooleanOptionKey const exit ("options:exit")
 

Detailed Description

Option display option keys.

Variable Documentation

BooleanOptionKey const utility::options::OptionKeys::options::all
BooleanOptionKey const utility::options::OptionKeys::options::exit

Referenced by utility::options::OptionCollection::add_built_in_options(), assure(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >::cl_value(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >::cl_value(), correlation_coefficient(), define_interface(), basic::random::determine_random_number_seed(), DRRAFTER::estimate_error(), find_residues_around_mutation(), DRRAFTER::get_coord_csts(), get_mutations_from_file(), get_one_letter_name(), get_three_letter_name(), graphics_main(), numeric::fourier::SHT::init(), numeric::fourier::kiss_dct(), numeric::fourier::kiss_fftr(), numeric::fourier::kiss_fftri(), numeric::fourier::kiss_idct(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >::legal_check(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >::legal_check(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >::legal_default_check(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >::legal_default_check(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >::legal_default_check_write_locked(), ligand_rmsd(), utility::options::OptionCollection::load(), load_loops_from_file(), load_set(), relax_starting_structure::main(), compare_times::main(), main(), make_mutations(), my_main(), ObjexxFCL::internal::ObserverGraph::ObserverGraph(), utility::io::ozstream::open_append(), ObjexxFCL::operator>>(), pyrosetta.toolbox.py_jobdistributor::output_scorefile(), DRRAFTER::parse_fasta(), DRRAFTER::pdbslice(), Prepare(), repack_test(), numeric::fourier::kiss_dct_state::resize(), numeric::fourier::kiss_fftr_state::resize(), DRRAFTER::setup_job(), binder::Context::sort_binders(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >::specified_check(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >::specified_check(), utility::options::std_exit_wrapper(), utility::options::IntegerOption::value_of(), utility::options::RealOption::value_of(), utility::options::RealVectorOption::value_of(), utility::options::IntegerVectorOption::value_of(), utility::options::BooleanVectorOption::value_of(), utility::options::ResidueChainVectorOption::value_of(), utility::options::BooleanOption::value_of(), utility::options::ResidueChainVectorOption::values_of(), and utility::options::IntegerVectorOption::values_of().

BooleanOptionKey const utility::options::OptionKeys::options::options
BooleanOptionKey const utility::options::OptionKeys::options::user

Referenced by utility::options::OptionCollection::add_built_in_options(), apps::public1::scenarios::chemically_conjugated_docking::add_extra_bodies(), add_rosetta_options_0(), align_pdbs(), UBQ_GTPase_disulfide_Mover::analyze_and_filter(), UBQ_E2Mover::analyze_and_filter(), analyze_base_pair_test(), IdentifyCDRClusters::apply(), ViewMembraneProteinMover::apply(), Minimize::apply(), ExposedStrandMover::apply(), HDdesignMover::apply(), MPDomainAssembly::apply(), RNA_ScoreMover::apply(), build_full_model_test(), BuildFullModel::BuildFullModel(), calc_rms_test(), calc_rmsf_and_avrg(), calculate_binding_energy(), calculate_pairwise_RMSD(), CaToAllAtom::CaToAllAtom(), HDdesignMover::cloak_and_setup(), cluster_outfile_test(), cluster_test(), compute_chem_shift_RMSD(), convert(), correct_rama(), create_rna_vall_torsions_test(), create_scorefxn(), create_theozyme_pdb(), cs_rosetta_rna_pdb(), basic::database::db_partition_from_options(), supercharge::design_supercharge(), supercharge::design_supercharge_AvNAPSA(), do_erraser2(), do_options_checks(), drrafter_error_estimation(), erraser2_test(), extract_pdbs_test(), basic::resource_manager::locator::FileSystemResourceLocator::FileSystemResourceLocator(), fill_designable_set(), filter_combine_long_loop(), FragmentAssemblyMover::FragmentAssemblyMover(), basic::database::full_cache_name(), gen_pep_bb_sequential(), basic::database::get_db_session(), get_exclid(), get_quota_per_silent(), utility::sql_database::DatabaseSessionManager::get_session_mysql(), utility::sql_database::DatabaseSessionManager::get_session_postgres(), get_stepwise_score_function(), graft_pdb(), harvest_motifs(), harvest_scores(), import_and_dump_pdb(), MPDomainAssembly::init_from_cmd(), UBQ_GTPase_disulfide_Mover::init_on_new_input(), UBQ_E2Mover::init_on_new_input(), PhProtocol::init_options(), initialize_native_pose(), initialize_peptide(), insert_stage_tag(), basic::options::int2afteroption(), basic::options::intafteroption(), utility::options::OptionCollection::load(), HBondReporter::load_job_data(), apps::pilot::frankdt::main(), main(), make_1mer_frags(), match_main(), MC_run(), merge_motifs(), mg_modeler_test(), minimize_with_constraints(), mutate_and_score_RNP(), my_main(), MyScoreMover::MyScoreMover(), nucleobase_probe_score_test(), utility::sql_database::session::open_mysql_session(), utility::sql_database::session::open_postgres_session(), optimize_embedding(), optimize_pose(), basic::options::optional_positive_intafteroption(), output_results(), basic::database::parse_database_connection(), pdb_to_silent_file(), pep_phipsi_analysis(), pep_rmsd_analysis(), post_rebuild_bulge_assembly(), basic::options::pre_tracer_process(), Prepare(), print_pep_analysis(), print_pep_csts(), basic::options::process(), quick_score_test(), read_fasta(), read_input_weights(), read_membrane(), read_native_sequence_for_entity_elements(), read_pose(), read_silent_input_as_library(), read_structures(), read_thickness(), basic::options::real2afteroption(), basic::options::real3afteroption(), basic::options::realafteroption(), rebuild_test(), report_and_dump(), resample_full_model_test(), reverse_convert(), rhiju_pdbstats(), rna_build_helix_test(), rna_denovo(), rna_denovo_legacy(), rna_design_test(), rna_fullatom_minimize_test(), rna_motif_test(), rna_sample_virtual_sugar(), RNA_ScoreMover::RNA_ScoreMover(), rna_thread_test(), run(), DockFragmentsMover::run(), ScoreFragmentSetMover::run(), FragmentAssemblyMover::run(), SolutionRescoreMover::run(), run_mc(), run_pep_prep(), RunPepSpec(), sequence_tolerance_main(), supercharge::set_surface(), setup_ca_constraints(), setup_mask(), setup_score_function(), setup_segment_insert(), zinc1_homodimer_design::setup_taskfactory(), zinc2_homodimer_design::setup_taskfactory_scorefunction_movers(), setup_tf(), skipping_relax(), slice_ellipsoid_envelope(), slice_sample_res_and_surrounding(), basic::options::start_files(), stepwise_monte_carlo_legacy(), basic::options::stringafteroption(), superimpose_pdb(), swa_rna_cluster(), swa_rna_sample(), HDdesignMover::task_constraint_setup(), thermal_sampler(), and basic::options::truefalseoption().