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dna.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces

 basic
 Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
 
 basic::options
 
 basic::options::OptionKeys
 
 basic::options::OptionKeys::dna
 
 basic::options::OptionKeys::dna::specificity
 
 basic::options::OptionKeys::dna::design
 
 basic::options::OptionKeys::dna::design::specificity
 
 basic::options::OptionKeys::dna::design::reversion
 

Variables

BooleanOptionKey const basic::options::OptionKeys::dna::dna
 
BooleanOptionKey const basic::options::OptionKeys::dna::specificity::specificity
 
BooleanOptionKey const basic::options::OptionKeys::dna::specificity::exclude_dna_dna
 
RealVectorOptionKey const basic::options::OptionKeys::dna::specificity::params
 
FileVectorOptionKey const basic::options::OptionKeys::dna::specificity::frag_files
 
BooleanOptionKey const basic::options::OptionKeys::dna::specificity::only_repack
 
BooleanOptionKey const basic::options::OptionKeys::dna::specificity::design_DNA
 
BooleanOptionKey const basic::options::OptionKeys::dna::specificity::soft_rep
 
BooleanOptionKey const basic::options::OptionKeys::dna::specificity::dump_pdbs
 
BooleanOptionKey const basic::options::OptionKeys::dna::specificity::fast
 
BooleanOptionKey const basic::options::OptionKeys::dna::specificity::randomize_motif
 
RealOptionKey const basic::options::OptionKeys::dna::specificity::Wfa_elec
 
RealOptionKey const basic::options::OptionKeys::dna::specificity::Wdna_bs
 
RealOptionKey const basic::options::OptionKeys::dna::specificity::Wdna_bp
 
RealOptionKey const basic::options::OptionKeys::dna::specificity::minimize_tolerance
 
StringOptionKey const basic::options::OptionKeys::dna::specificity::weights_tag
 
StringOptionKey const basic::options::OptionKeys::dna::specificity::weights_tag_list
 
StringOptionKey const basic::options::OptionKeys::dna::specificity::min_type
 
StringOptionKey const basic::options::OptionKeys::dna::specificity::mode
 
StringOptionKey const basic::options::OptionKeys::dna::specificity::score_function
 
BooleanOptionKey const basic::options::OptionKeys::dna::specificity::pre_minimize
 
BooleanOptionKey const basic::options::OptionKeys::dna::specificity::post_minimize
 
BooleanOptionKey const basic::options::OptionKeys::dna::specificity::pre_pack
 
IntegerOptionKey const basic::options::OptionKeys::dna::specificity::nloop
 
IntegerOptionKey const basic::options::OptionKeys::dna::specificity::n_inner
 
IntegerOptionKey const basic::options::OptionKeys::dna::specificity::n_outer
 
IntegerOptionKey const basic::options::OptionKeys::dna::specificity::nstep_water
 
IntegerOptionKey const basic::options::OptionKeys::dna::specificity::moving_jump
 
IntegerOptionKey const basic::options::OptionKeys::dna::specificity::motif_begin
 
IntegerOptionKey const basic::options::OptionKeys::dna::specificity::motif_size
 
StringVectorOptionKey const basic::options::OptionKeys::dna::specificity::pdb_pos
 
StringVectorOptionKey const basic::options::OptionKeys::dna::specificity::methylate
 
RealVectorOptionKey const basic::options::OptionKeys::dna::specificity::dna_backbone_torsion_sdevs
 
RealOptionKey const basic::options::OptionKeys::dna::specificity::dna_sugar_torsion_sdev
 
RealOptionKey const basic::options::OptionKeys::dna::specificity::dna_chi_torsion_sdev
 
StringOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_wtd_tag
 
BooleanOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_for_bb
 
RealOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_ramp_width_A2
 
RealOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_overlap_gap
 
RealOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_overlap_width_A2
 
RealOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_water_fade
 
RealVectorOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_wtd_prefactors
 
RealVectorOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_waters_sp2
 
RealVectorOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_waters_sp3
 
RealVectorOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_waters_ring
 
RealOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_waters_donor
 
RealOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_bridge_angle_widthscale
 
BooleanOptionKey const basic::options::OptionKeys::dna::design::design
 
BooleanOptionKey const basic::options::OptionKeys::dna::design::output_unbound_pdb
 
RealOptionKey const basic::options::OptionKeys::dna::design::z_cutoff
 
StringOptionKey const basic::options::OptionKeys::dna::design::protein_scan
 
StringOptionKey const basic::options::OptionKeys::dna::design::checkpoint
 
BooleanOptionKey const basic::options::OptionKeys::dna::design::minimize
 
StringVectorOptionKey const basic::options::OptionKeys::dna::design::dna_defs
 
StringOptionKey const basic::options::OptionKeys::dna::design::dna_defs_file
 
BooleanOptionKey const basic::options::OptionKeys::dna::design::nopdb
 
BooleanOptionKey const basic::options::OptionKeys::dna::design::designable_second_shell
 
BooleanOptionKey const basic::options::OptionKeys::dna::design::base_contacts_only
 
IntegerOptionKey const basic::options::OptionKeys::dna::design::probe_specificity
 
BooleanOptionKey const basic::options::OptionKeys::dna::design::reversion_scan
 
BooleanOptionKey const basic::options::OptionKeys::dna::design::binding
 
RealOptionKey const basic::options::OptionKeys::dna::design::Boltz_temp
 
BooleanOptionKey const basic::options::OptionKeys::dna::design::repack_only
 
BooleanOptionKey const basic::options::OptionKeys::dna::design::sparse_pdb_output
 
BooleanOptionKey const basic::options::OptionKeys::dna::design::specificity::specificity
 
BooleanOptionKey const basic::options::OptionKeys::dna::design::specificity::output_structures
 
BooleanOptionKey const basic::options::OptionKeys::dna::design::specificity::include_dna_potentials
 
BooleanOptionKey const basic::options::OptionKeys::dna::design::reversion::reversion
 
RealOptionKey const basic::options::OptionKeys::dna::design::reversion::dscore_cutoff
 
RealOptionKey const basic::options::OptionKeys::dna::design::reversion::dspec_cutoff
 

Detailed Description

basic::options::OptionKeys collection

Author
Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)
James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)