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Variables
test.T009_Exceptions Namespace Reference

Variables

string xml = "<ROSETTASCRIPTS></ROSETTASCRIPTS>"
 
tuple tag = rosetta.utility.tag.Tag.create(xml)
 
tuple options = rosetta.basic.options.process()
 
tuple parser = rosetta.protocols.rosetta_scripts.RosettaScriptsParser()
 INTERPRETING RESULTS. More...
 
tuple pose = pyrosetta.Pose()
 
tuple t = sys.exc_info()
 
tuple e = sys.exc_info()
 

Variable Documentation

tuple test.T009_Exceptions.e = sys.exc_info()

Referenced by binder.add_relevant_includes(), add_rosetta_options_4(), numeric::deriv.angle_p1_deriv(), numeric::deriv.angle_p1_p2_p3_deriv(), numeric::deriv.angle_p2_deriv(), numeric::urs_Quat.asR(), utility::keys::ClassKeyMap< K, T, C >.assign(), utility::keys::SmallKeyMap< K, T >.assign(), numeric::AxisRotationSampler.AxisRotationSampler(), binder::ClassBinder.bind(), binder.bind_enum(), utility::graph.breadth_first_search_prune(), utility::graph.breadth_first_visit_prune(), numeric::alignment::QCPKernel< Real >.calc_rmsd_Theobald_method(), numeric.ccd_angle(), utility::options::OptionCollection.check_specs(), utility::options::OptionCollection.check_values(), utility::keys::ClassKeyMap< K, T, C >.ClassKeyMap(), utility::options::OptionCollection.cleaned(), numeric.cubic_polynomial_from_spline(), numeric::statistics.Dawson(), utility::tag.define_xml_schema_group(), numeric::deriv.dihedral_deriv_second(), numeric::deriv.dihedral_p1_cosine_deriv_first(), numeric::deriv.dihedral_p2_cosine_deriv_first(), ObjexxFCL.distance(), ObjexxFCL.distance_squared(), numeric::kinematic_closure.dixon_eig(), ObjexxFCL.dot(), ObjexxFCL.dot_product(), numeric::coordinate_fitting::CoordinateArray_RMSD_FlatLookup< Real >.entry_radius(), numeric::statistics.errf(), numeric::statistics.errfi(), numeric.euler_angles_from_rotation_matrix_ZXZ(), numeric.euler_angles_from_rotation_matrix_ZYX(), numeric.euler_angles_from_rotation_matrix_ZYZ(), numeric::xyzTransform< numeric::Real >.euler_angles_rad(), numeric::HomogeneousTransform< double >.euler_angles_rad(), PerformanceBenchmark.execute(), ObjexxFCL::FArray1D< double >.FArray1D(), ObjexxFCL::Fstring.find(), ObjexxFCL::Fstring.find_first_not_of(), ObjexxFCL::Fstring.find_first_of(), utility::options::OptionCollection.find_key_cl(), ObjexxFCL::Fstring.find_last_not_of(), ObjexxFCL::Fstring.find_last_of(), numeric::EulerAngles< typename >.from_rotation_matrix(), utility::factory::Factory< typename >.fxn_registry_transfer(), ObjexxFCL::Fstring.has_any_of(), numeric::xyzTransform< numeric::Real >.hash64(), numeric::HomogeneousTransform< double >.HomogeneousTransform(), ObjexxFCL.is_any_of(), ObjexxFCL::Fstring.is_type(), ObjexxFCL::KeyFArray1D< typename >.KeyFArray1D(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >.legal_string(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >.legal_string(), ObjexxFCL::FArray1< T >.length(), ObjexxFCL::FArray1< T >.length_squared(), main(), binder::ClassBinder.maybe_base_classes(), utility::options::OptionCollection.n_part(), numeric::HomogeneousTransform< double >.normal(), utility::sql_database::session.open_mysql_session(), utility::sql_database::session.open_postgres_session(), utility::sql_database::session.open_sqlite3_session(), utility::BitVector< B >.operator+=(), utility.operator-(), utility::BitSet< B >.operator-=(), utility::BitVector< B >.operator-=(), ObjexxFCL.operator<(), ObjexxFCL.operator<<(), utility::options.operator<<(), ObjexxFCL.operator<=(), utility::keys::KeyVector< K, T >.operator=(), utility::keys::ClassKeyMap< K, T, C >.operator=(), utility::keys::SmallKeyMap< K, T >.operator=(), utility::keys::ClassKeyVector< K, T, C >.operator=(), utility::keys::SmallKeyVector< PathVectorOptionKey, PathVectorOption >.operator=(), ObjexxFCL.operator==(), utility::BitVector< B >.operator|=(), numeric::HomogeneousTransform< double >.orthoganol(), numeric::deriv.p1_theta_deriv(), basic::sampling::orientations::Quaternion.PrintEuler(), utility::factory::Factory< typename >.ptr_registry_transfer(), numeric::linear_algebra.qzval(), ObjexxFCL.read_binary(), numeric::xyzTransform< numeric::Real >.rt6(), ScoreFragmentSetMover.run(), ObjexxFCL::FArray2< T >.set_diagonal(), utility::options::OptionCollection.set_option_value_file(), utility::options.show_accessed_options_T(), utility::options::OptionCollection.show_all(), utility::options::OptionCollection.show_all_hier(), utility::options::OptionCollection.show_help(), utility::options::OptionCollection.show_help_hier(), utility::options::OptionCollection.show_inaccessed_user_options(), utility::options::OptionCollection.show_table_text(), utility::options::OptionCollection.show_table_Wiki(), utility::options.show_unused_options_T(), utility::options::OptionCollection.show_user(), sigmoid_train(), numeric::statistics.sinc(), utility::keys::SmallKeyMap< K, T >.SmallKeyMap(), binder::Context.sort_binders(), utility.split_whitespace(), utility::keys::KeyLookup< K >.stripped_whitespace(), svm_predict_probability(), utility.terminate_handler(), ObjexxFCL::FArray2< T >.to_diag(), ObjexxFCL::FArray2< T >.to_identity(), ObjexxFCL::Fstring.type_of(), numeric::UniformRotationSampler.UniformRotationSampler(), basic::resource_manager::ResourceManager.validate_input_against_xsd(), numeric::statistics.w(), utility::options::OptionCollection.wrapped(), ObjexxFCL.write_binary(), and basic::database.write_schema_to_database().

tuple test.T009_Exceptions.options = rosetta.basic.options.process()
tuple test.T009_Exceptions.parser = rosetta.protocols.rosetta_scripts.RosettaScriptsParser()

INTERPRETING RESULTS.

COMMANDLINE COMPATIBILITY

Interaction Energy vs. Binding Energy COMMANDLINE COMPATIBILITY

INTERPRETING RESULTS.

INTERPRETING RESULTS COMMANDLINE COMPATIBILITY

Referenced by add_rosetta_options_1().

tuple test.T009_Exceptions.pose = pyrosetta.Pose()
tuple test.T009_Exceptions.t = sys.exc_info()

Referenced by numeric.add(), binder.add_relevant_includes(), add_rosetta_options_0(), ObjexxFCL::FArray< T >.attach(), binder.base_default_default_constructor_available(), binder::ClassBinder.bind(), binder::ClassBinder.bind_with(), ObjexxFCL::format.bite(), ObjexxFCL::CArray< typename >.CArray(), ObjexxFCL::CArrayP< typename >.CArrayP(), utility::options::OptionCollection.cleaned(), ObjexxFCL::FArray1D< double >.dimension(), ObjexxFCL::KeyFArray1D< typename >.dimension(), ObjexxFCL::FArray2D< double >.dimension(), ObjexxFCL::KeyFArray2D< typename >.dimension(), ObjexxFCL::FArray3D< typename >.dimension(), ObjexxFCL::KeyFArray3D< typename >.dimension(), ObjexxFCL::FArray4D< typename >.dimension(), ObjexxFCL::KeyFArray4D< typename >.dimension(), ObjexxFCL::FArray5D< typename >.dimension(), ObjexxFCL::KeyFArray5D< typename >.dimension(), ObjexxFCL::FArray6D< typename >.dimension(), ObjexxFCL::KeyFArray6D< typename >.dimension(), numeric::crick_equations.dz_ddz1(), ObjexxFCL::format.E(), ObjexxFCL.equali(), numeric::model_quality.erfcc(), numeric::statistics.erfcx_y100(), basic::sampling::orientations::Quaternion.euler(), PerformanceBenchmark.execute(), ObjexxFCL::format.F(), ObjexxFCL::FArray1D< double >.FArray1D(), ObjexxFCL::FArray2D< double >.FArray2D(), ObjexxFCL::FArray3D< typename >.FArray3D(), ObjexxFCL::FArray4D< typename >.FArray4D(), ObjexxFCL::FArray5D< typename >.FArray5D(), ObjexxFCL::FArray6D< typename >.FArray6D(), ObjexxFCL.fixed_Fstring_of(), ObjexxFCL.fixed_string_of(), utility.from_string(), ObjexxFCL.Fstring_of(), ObjexxFCL.Fstring_of< std::string >(), ObjexxFCL.general_Fstring_of(), ObjexxFCL.general_string_of(), utility.get_current_date(), binder.get_type_dependencies(), binder::Context.global_insertion_operator(), numeric.hsv_to_rgb(), ObjexxFCL::format.I(), ObjexxFCL::FArray1D< double >.initializer(), ObjexxFCL::KeyFArray1D< typename >.initializer(), ObjexxFCL::FArray2D< double >.initializer(), ObjexxFCL::KeyFArray2D< typename >.initializer(), ObjexxFCL::FArray3D< typename >.initializer(), ObjexxFCL::KeyFArray3D< typename >.initializer(), ObjexxFCL::FArray4D< typename >.initializer(), ObjexxFCL::KeyFArray4D< typename >.initializer(), ObjexxFCL::FArray5D< typename >.initializer(), ObjexxFCL::KeyFArray5D< typename >.initializer(), ObjexxFCL::FArray6D< typename >.initializer(), ObjexxFCL::KeyFArray6D< typename >.initializer(), binder.is_binding_requested(), binder.is_skipping_requested(), binder.is_std_function_bindable(), ObjexxFCL::Fstring.is_type(), ObjexxFCL.is_type(), ObjexxFCL::FArray< T >.is_uniform(), numeric.jacobi_rotation(), ObjexxFCL::KeyFArray1D< typename >.KeyFArray1D(), ObjexxFCL::KeyFArray2D< typename >.KeyFArray2D(), ObjexxFCL::KeyFArray3D< typename >.KeyFArray3D(), ObjexxFCL::KeyFArray4D< typename >.KeyFArray4D(), ObjexxFCL::KeyFArray5D< typename >.KeyFArray5D(), ObjexxFCL::KeyFArray6D< typename >.KeyFArray6D(), numeric::fourier.kf_bfly2(), numeric::fourier.kf_bfly_generic(), ObjexxFCL.lead_zero_Fstring_of(), ObjexxFCL.lead_zero_string_of(), ObjexxFCL.left_Fstring_of(), ObjexxFCL.left_string_of(), ObjexxFCL::format.LJ(), ObjexxFCL.lowercased(), numeric::model_quality.maxsub(), rosetta_binders::utility_vector_binder< Vector, L, T, Allocator >.maybe_has_equal_operator(), utility::options::OptionCollection.merged(), multiclass_probability(), numeric.multiply(), basic::sampling::orientations::Quaternion.Normalize(), ObjexxFCL.operator!=(), utility::json_spirit::Value_impl< Config >::Variant_converter_visitor.operator()(), numeric::interpolation::TempStruct< T, N >.operator()(), ObjexxFCL.operator*(), numeric::sphericalVector< typename >.operator*=(), numeric::xyzTriple< typename >.operator*=(), numeric::xyzVector< core::Real >.operator*=(), ObjexxFCL::CArray< typename >.operator*=(), ObjexxFCL::FArray< T >.operator*=(), ObjexxFCL::CArrayP< typename >.operator*=(), numeric::xyzMatrix< T >.operator*=(), ObjexxFCL.operator+(), numeric::sphericalVector< typename >.operator+=(), numeric::xyzTriple< typename >.operator+=(), numeric::xyzVector< core::Real >.operator+=(), ObjexxFCL::CArray< typename >.operator+=(), ObjexxFCL::FArray< T >.operator+=(), ObjexxFCL::CArrayP< typename >.operator+=(), numeric::xyzMatrix< T >.operator+=(), ObjexxFCL.operator-(), numeric::sphericalVector< typename >.operator-=(), numeric::xyzTriple< typename >.operator-=(), numeric::xyzVector< core::Real >.operator-=(), ObjexxFCL::CArray< typename >.operator-=(), ObjexxFCL::FArray< T >.operator-=(), ObjexxFCL::CArrayP< typename >.operator-=(), numeric::xyzMatrix< T >.operator-=(), ObjexxFCL.operator/(), ObjexxFCL::CArray< typename >.operator/=(), ObjexxFCL::FArray< T >.operator/=(), ObjexxFCL::CArrayP< typename >.operator/=(), numeric.operator<<(), utility::io::ocstream.operator<<(), utility::io::orstream.operator<<(), utility::io::ozstream.operator<<(), utility::io::mpi_stream::basic_mpi_ostream< Elem, Tr, ElemA, ByteT, ByteAT >.operator<<(), zlib_stream::basic_zip_ostream< Elem, Tr, ElemA, ByteT, ByteAT >.operator<<(), ObjexxFCL::CArray< typename >.operator=(), numeric::sphericalVector< typename >.operator=(), numeric::xyzTriple< typename >.operator=(), numeric::xyzVector< core::Real >.operator=(), ObjexxFCL::CArrayP< typename >.operator=(), numeric::xyzMatrix< T >.operator=(), ObjexxFCL.operator>(), ObjexxFCL.operator>=(), numeric.operator>>(), utility::io::icstream.operator>>(), utility::io::irstream.operator>>(), utility::io::izstream.operator>>(), powi(), basic.prof_show(), basic::sampling::orientations::QuaternionGrid.QuaternionGrid(), basic::YamlEmitter.quote_string(), basic::JsonEmitter.quote_string(), numeric::linear_algebra.qzhes(), numeric::linear_algebra.qzit(), numeric::linear_algebra.qzval(), numeric::linear_algebra.qzvec(), numeric.read_row(), ObjexxFCL::FArray1D< double >.redimension(), ObjexxFCL::KeyFArray1D< typename >.redimension(), ObjexxFCL::FArray2D< double >.redimension(), ObjexxFCL::KeyFArray2D< typename >.redimension(), ObjexxFCL::FArray3D< typename >.redimension(), ObjexxFCL::KeyFArray3D< typename >.redimension(), ObjexxFCL::FArray4D< typename >.redimension(), ObjexxFCL::KeyFArray4D< typename >.redimension(), ObjexxFCL::FArray5D< typename >.redimension(), ObjexxFCL::KeyFArray5D< typename >.redimension(), ObjexxFCL::FArray6D< typename >.redimension(), ObjexxFCL::KeyFArray6D< typename >.redimension(), ObjexxFCL.right_Fstring_of(), ObjexxFCL.right_string_of(), ObjexxFCL::format.RJ(), numeric::model_quality.rms_fit(), numeric::model_quality.rmsfitca2(), numeric::model_quality.rmsfitca3(), ObjexxFCL.rvalue_cast(), ObjexxFCL.scientific_Fstring_of(), ObjexxFCL.scientific_string_of(), Solver.select_working_set(), Solver_NU.select_working_set(), sequence_tolerance_main(), pyrosetta.Set(), sigmoid_train(), numeric::xyzTriple< typename >.square(), numeric::xyzVector< core::Real >.square(), ObjexxFCL::format.SS(), ObjexxFCL.string_of(), utility.string_split(), numeric.subtract(), ObjexxFCL::format.SW(), swap(), numeric::Quaternion< T >.swap(), binder.template_specialization(), numeric::kinematic_closure.test_point_value2(), basic::gpu::Timer.Timer(), utility.timestamp_millis(), utility.timestamp_millis_short(), utility.to_string(), utility.to_string< char >(), numeric::geometry::BoundingBox< Vector >.translate(), ObjexxFCL::Fstring.type_of(), ObjexxFCL.type_of(), ObjexxFCL.uppercased(), rosetta_binders::utility_vector_binder< Vector, L, T, Allocator >.utility_vector_binder(), pyrosetta.Vector1(), numeric::statistics.w_im_y100(), and rosetta_binders.xyzVector_add_on_binder().

tuple test.T009_Exceptions.tag = rosetta.utility.tag.Tag.create(xml)
string test.T009_Exceptions.xml = "<ROSETTASCRIPTS></ROSETTASCRIPTS>"