Rosetta  2020.37
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Namespaces | Variables
basic::options::OptionKeys::remodel Namespace Reference

Namespaces

 design
 
 domainFusion
 
 RemodelLoopMover
 
 staged_sampling
 

Variables

BooleanOptionKey const remodel
 
FileOptionKey const blueprint
 
FileOptionKey const cstfile
 
BooleanOptionKey const cst_fa_only
 
IntegerOptionKey const cstfilter
 
StringOptionKey const cen_sfxn
 
BooleanOptionKey const check_scored_centroid
 
IntegerOptionKey const num_trajectory
 
IntegerOptionKey const save_top
 
BooleanOptionKey const swap_refine_confirm_protocols
 
BooleanOptionKey const bypass_fragments
 
BooleanOptionKey const use_same_length_fragments
 
BooleanOptionKey const no_jumps
 
IntegerOptionKey const reroot_tree
 
BooleanOptionKey const use_blueprint_sequence
 
BooleanOptionKey const quick_and_dirty
 
BooleanOptionKey const checkpoint
 
BooleanOptionKey const use_pose_relax
 
BooleanOptionKey const use_cart_relax
 
BooleanOptionKey const free_relax
 
StringOptionKey const generic_aa
 
RealOptionKey const cluster_radius
 
BooleanOptionKey const use_clusters
 
BooleanOptionKey const run_confirmation
 
BooleanOptionKey const cluster_on_entire_pose
 
IntegerOptionKey const dr_cycles
 
IntegerOptionKey const two_chain_tree
 
IntegerOptionKey const repeat_structure
 
IntegerOptionKey const lh_ex_limit
 
StringVectorOptionKey const lh_filter_string
 
IntegerOptionKey const lh_cbreak_selection
 
BooleanOptionKey const lh_closure_filter
 
BooleanOptionKey const cen_minimize
 
IntegerOptionKey const core_cutoff
 
IntegerOptionKey const boundary_cutoff
 
StringOptionKey const coreAA
 
StringOptionKey const boundaryAA
 
StringOptionKey const surfaceAA
 
BooleanOptionKey const design_around_ligand
 
BooleanOptionKey const move_ligand
 
BooleanOptionKey const resclass_by_sasa
 
RealOptionKey const helical_rise
 
RealOptionKey const helical_radius
 
RealOptionKey const helical_omega
 
RealVectorOptionKey const filter_rise
 
RealVectorOptionKey const filter_radius
 
RealVectorOptionKey const filter_omega
 
RealOptionKey const COM_sd
 
RealOptionKey const COM_tolerance
 
RealOptionKey const vdw
 
RealOptionKey const rama
 
RealOptionKey const cbeta
 
RealOptionKey const cenpack
 
RealOptionKey const rg_local
 
RealOptionKey const hb_lrbb
 
RealOptionKey const hb_srbb
 
RealOptionKey const rg
 
RealOptionKey const rsigma
 
RealOptionKey const ss_pair
 
BooleanOptionKey const build_disulf
 
RealOptionKey const match_rt_limit
 
IntegerVectorOptionKey const disulf_landing_range
 
BooleanOptionKey const rank_by_bsasa
 

Variable Documentation

FileOptionKey const basic::options::OptionKeys::remodel::blueprint
IntegerOptionKey const basic::options::OptionKeys::remodel::boundary_cutoff

Referenced by add_rosetta_options_12().

StringOptionKey const basic::options::OptionKeys::remodel::boundaryAA

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::build_disulf

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::bypass_fragments

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::cbeta

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::cen_minimize

Referenced by add_rosetta_options_12().

StringOptionKey const basic::options::OptionKeys::remodel::cen_sfxn

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::cenpack

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::check_scored_centroid

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::checkpoint

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::cluster_on_entire_pose

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::cluster_radius

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::COM_sd

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::COM_tolerance

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::core_cutoff
StringOptionKey const basic::options::OptionKeys::remodel::coreAA

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::cst_fa_only

Referenced by add_rosetta_options_12().

FileOptionKey const basic::options::OptionKeys::remodel::cstfile

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::cstfilter

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::design_around_ligand

Referenced by add_rosetta_options_12().

IntegerVectorOptionKey const basic::options::OptionKeys::remodel::disulf_landing_range

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::dr_cycles

Referenced by add_rosetta_options_12().

RealVectorOptionKey const basic::options::OptionKeys::remodel::filter_omega

Referenced by add_rosetta_options_12().

RealVectorOptionKey const basic::options::OptionKeys::remodel::filter_radius

Referenced by add_rosetta_options_12().

RealVectorOptionKey const basic::options::OptionKeys::remodel::filter_rise

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::free_relax

Referenced by add_rosetta_options_12().

StringOptionKey const basic::options::OptionKeys::remodel::generic_aa

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::hb_lrbb

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::hb_srbb

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::helical_omega

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::helical_radius

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::helical_rise

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::lh_cbreak_selection

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::lh_closure_filter

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::lh_ex_limit

Referenced by add_rosetta_options_12().

StringVectorOptionKey const basic::options::OptionKeys::remodel::lh_filter_string

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::match_rt_limit

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::move_ligand

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::no_jumps

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::num_trajectory

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::quick_and_dirty

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::rama
BooleanOptionKey const basic::options::OptionKeys::remodel::rank_by_bsasa

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::remodel

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::repeat_structure

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::reroot_tree

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::resclass_by_sasa

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::rg

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::rg_local

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::rsigma

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::run_confirmation

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::save_top

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::ss_pair

Referenced by add_rosetta_options_12().

StringOptionKey const basic::options::OptionKeys::remodel::surfaceAA

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::swap_refine_confirm_protocols

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::two_chain_tree

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::use_blueprint_sequence

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::use_cart_relax

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::use_clusters

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::use_pose_relax

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::use_same_length_fragments

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::vdw