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Rosetta
2020.50
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IntegerOptionKey const basic::options::OptionKeys::ddg::bbnbrs |
Referenced by add_rosetta_options_7(), compute_folding_energies(), and main().
BooleanOptionKey const basic::options::OptionKeys::ddg::cartesian |
Referenced by add_rosetta_options_7().
RealOptionKey const basic::options::OptionKeys::ddg::constraint_weight |
Referenced by add_rosetta_options_7().
RealOptionKey const basic::options::OptionKeys::ddg::cst_dist_cutoff |
Referenced by add_rosetta_options_7(), and optimize_pose().
BooleanOptionKey const basic::options::OptionKeys::ddg::ddg |
Referenced by add_rosetta_options_7(), correlation(), and main().
BooleanOptionKey const basic::options::OptionKeys::ddg::debug_output |
Referenced by add_rosetta_options_7(), and main().
BooleanOptionKey const basic::options::OptionKeys::ddg::dump_pdbs |
Referenced by add_rosetta_options_7(), and main().
RealOptionKey const basic::options::OptionKeys::ddg::ens_variation |
Referenced by add_rosetta_options_7().
IntegerOptionKey const basic::options::OptionKeys::ddg::extract_element_nbrs |
Referenced by add_rosetta_options_7().
BooleanOptionKey const basic::options::OptionKeys::ddg::fd_mode |
Referenced by add_rosetta_options_7(), and main().
BooleanOptionKey const basic::options::OptionKeys::ddg::flex_bb |
Referenced by add_rosetta_options_7().
BooleanOptionKey const basic::options::OptionKeys::ddg::force_iterations |
Referenced by add_rosetta_options_7().
IntegerOptionKey const basic::options::OptionKeys::ddg::frag_nbrs |
Referenced by add_rosetta_options_7().
RealOptionKey const basic::options::OptionKeys::ddg::harmonic_ca_tether |
Referenced by add_rosetta_options_7(), main(), and optimize_pose().
BooleanOptionKey const basic::options::OptionKeys::ddg::initial_repack |
Referenced by add_rosetta_options_7().
IntegerOptionKey const basic::options::OptionKeys::ddg::interface_ddg |
Referenced by add_rosetta_options_7(), and main().
IntegerOptionKey const basic::options::OptionKeys::ddg::iterations |
Referenced by add_rosetta_options_7(), MPDomainAssembly::apply(), main(), and my_main().
BooleanOptionKey const basic::options::OptionKeys::ddg::json |
Referenced by add_rosetta_options_7(), numeric::read_tensor_from_file(), and numeric::write_tensor_to_file().
StringOptionKey const basic::options::OptionKeys::ddg::last_accepted_pose_dir |
Referenced by add_rosetta_options_7(), and run_mc().
BooleanOptionKey const basic::options::OptionKeys::ddg::legacy |
Referenced by add_rosetta_options_7(), and main().
BooleanOptionKey const basic::options::OptionKeys::ddg::local_opt_only |
Referenced by add_rosetta_options_7(), and main().
IntegerOptionKey const basic::options::OptionKeys::ddg::lowest_x_decoys |
Referenced by add_rosetta_options_7().
BooleanOptionKey const basic::options::OptionKeys::ddg::mean |
Referenced by add_rosetta_options_7().
BooleanOptionKey const basic::options::OptionKeys::ddg::min |
Referenced by add_rosetta_options_7().
BooleanOptionKey const basic::options::OptionKeys::ddg::min_cst |
Referenced by add_rosetta_options_7(), and main().
StringOptionKey const basic::options::OptionKeys::ddg::min_cst_weights |
Referenced by add_rosetta_options_7().
BooleanOptionKey const basic::options::OptionKeys::ddg::min_with_cst |
Referenced by add_rosetta_options_7(), and run_mc().
StringOptionKey const basic::options::OptionKeys::ddg::minimization_patch |
Referenced by add_rosetta_options_7(), and main().
StringOptionKey const basic::options::OptionKeys::ddg::minimization_scorefunction |
Referenced by add_rosetta_options_7(), and main().
StringOptionKey const basic::options::OptionKeys::ddg::mut_file |
Referenced by add_rosetta_options_7(), and main().
BooleanOptionKey const basic::options::OptionKeys::ddg::mut_only |
Referenced by add_rosetta_options_7(), and main().
IntegerOptionKey const basic::options::OptionKeys::ddg::n_converged |
Referenced by add_rosetta_options_7().
IntegerOptionKey const basic::options::OptionKeys::ddg::nfrags |
Referenced by add_rosetta_options_7(), DockFragmentsMover::cluster_frags(), gen_pep_bb_sequential(), and make_fragments().
BooleanOptionKey const basic::options::OptionKeys::ddg::no_bb_movement |
Referenced by add_rosetta_options_7(), and run_mc().
BooleanOptionKey const basic::options::OptionKeys::ddg::no_constraints |
Referenced by add_rosetta_options_7(), and optimize_pose().
IntegerOptionKey const basic::options::OptionKeys::ddg::ntrials |
Referenced by add_rosetta_options_7().
BooleanOptionKey const basic::options::OptionKeys::ddg::opt_input_structure |
Referenced by add_rosetta_options_7().
RealOptionKey const basic::options::OptionKeys::ddg::opt_radius |
Referenced by add_rosetta_options_7().
BooleanOptionKey const basic::options::OptionKeys::ddg::optimize_proline |
Referenced by add_rosetta_options_7().
BooleanOptionKey const basic::options::OptionKeys::ddg::optimize_wt |
Referenced by add_rosetta_options_7().
StringOptionKey const basic::options::OptionKeys::ddg::out |
Referenced by add_rosetta_options_7().
StringOptionKey const basic::options::OptionKeys::ddg::out_pdb_prefix |
Referenced by add_rosetta_options_7(), main(), and minimize_with_constraints().
StringOptionKey const basic::options::OptionKeys::ddg::output_dir |
Referenced by add_rosetta_options_7(), and minimize_with_constraints().
BooleanOptionKey const basic::options::OptionKeys::ddg::output_silent |
Referenced by add_rosetta_options_7(), pyrosetta.io::poses_to_silent(), and rna_build_helix_test().
BooleanOptionKey const basic::options::OptionKeys::ddg::pack_until_converge |
Referenced by add_rosetta_options_7().
BooleanOptionKey const basic::options::OptionKeys::ddg::print_per_res_diff |
Referenced by add_rosetta_options_7().
BooleanOptionKey const basic::options::OptionKeys::ddg::ramp_repulsive |
Referenced by add_rosetta_options_7(), and minimize_with_constraints().
BooleanOptionKey const basic::options::OptionKeys::ddg::rna_all_prot_sc_min_only |
Referenced by add_rosetta_options_7(), and minimize_with_constraints().
BooleanOptionKey const basic::options::OptionKeys::ddg::sc_min_only |
Referenced by add_rosetta_options_7(), minimize_with_constraints(), and setup_ca_constraints().
RealOptionKey const basic::options::OptionKeys::ddg::score_cutoff |
Referenced by add_rosetta_options_7().
BooleanOptionKey const basic::options::OptionKeys::ddg::suppress_checkpointing |
Referenced by add_rosetta_options_7().
RealOptionKey const basic::options::OptionKeys::ddg::temperature |
Referenced by add_rosetta_options_7().
BooleanOptionKey const basic::options::OptionKeys::ddg::use_rotamer_constraints_to_native |
Referenced by add_rosetta_options_7().
StringOptionKey const basic::options::OptionKeys::ddg::weight_file |
Referenced by add_rosetta_options_7(), and main().
BooleanOptionKey const basic::options::OptionKeys::ddg::wt_only |
Referenced by add_rosetta_options_7(), and main().