basic::options::OptionKeys::ddg Namespace Reference

Variables
BooleanOptionKey const	ddg
BooleanOptionKey const	opt_input_structure
BooleanOptionKey const	pack_until_converge
BooleanOptionKey const	no_constraints
BooleanOptionKey const	use_rotamer_constraints_to_native
BooleanOptionKey const	suppress_checkpointing
BooleanOptionKey const	wt_only
BooleanOptionKey const	mut_only
BooleanOptionKey const	optimize_wt
BooleanOptionKey const	output_silent
StringOptionKey const	minimization_scorefunction
StringOptionKey const	minimization_patch
BooleanOptionKey const	min_cst
IntegerOptionKey const	lowest_x_decoys
BooleanOptionKey const	local_opt_only
BooleanOptionKey const	print_per_res_diff
BooleanOptionKey const	mean
BooleanOptionKey const	min
BooleanOptionKey const	no_bb_movement
BooleanOptionKey const	initial_repack
IntegerOptionKey const	interface_ddg
RealOptionKey const	ens_variation
BooleanOptionKey const	sc_min_only
BooleanOptionKey const	rna_all_prot_sc_min_only
StringOptionKey const	min_cst_weights
RealOptionKey const	opt_radius
StringOptionKey const	output_dir
StringOptionKey const	last_accepted_pose_dir
BooleanOptionKey const	min_with_cst
RealOptionKey const	temperature
BooleanOptionKey const	ramp_repulsive
StringOptionKey const	mut_file
StringOptionKey const	out_pdb_prefix
RealOptionKey const	constraint_weight
RealOptionKey const	harmonic_ca_tether
IntegerOptionKey const	iterations
BooleanOptionKey const	force_iterations
StringOptionKey const	out
BooleanOptionKey const	debug_output
BooleanOptionKey const	dump_pdbs
StringOptionKey const	weight_file
RealOptionKey const	cst_dist_cutoff
BooleanOptionKey const	cartesian
IntegerOptionKey const	extract_element_nbrs
IntegerOptionKey const	frag_nbrs
IntegerOptionKey const	bbnbrs
IntegerOptionKey const	nfrags
IntegerOptionKey const	ntrials
BooleanOptionKey const	optimize_proline
BooleanOptionKey const	flex_bb
BooleanOptionKey const	fd_mode
BooleanOptionKey const	legacy
BooleanOptionKey const	json
IntegerOptionKey const	n_converged
RealOptionKey const	score_cutoff

Variable Documentation

IntegerOptionKey const basic::options::OptionKeys::ddg::bbnbrs

Referenced by add_rosetta_options_7(), compute_folding_energies(), and main().

BooleanOptionKey const basic::options::OptionKeys::ddg::cartesian

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::ddg::constraint_weight

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::ddg::cst_dist_cutoff

Referenced by add_rosetta_options_7(), and optimize_pose().

BooleanOptionKey const basic::options::OptionKeys::ddg::ddg

Referenced by add_rosetta_options_7(), correlation(), and main().

BooleanOptionKey const basic::options::OptionKeys::ddg::debug_output

Referenced by add_rosetta_options_7(), and main().

BooleanOptionKey const basic::options::OptionKeys::ddg::dump_pdbs

Referenced by add_rosetta_options_7(), and main().

RealOptionKey const basic::options::OptionKeys::ddg::ens_variation

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::ddg::extract_element_nbrs

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::ddg::fd_mode

Referenced by add_rosetta_options_7(), and main().

BooleanOptionKey const basic::options::OptionKeys::ddg::flex_bb

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::ddg::force_iterations

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::ddg::frag_nbrs

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::ddg::harmonic_ca_tether

Referenced by add_rosetta_options_7(), main(), and optimize_pose().

BooleanOptionKey const basic::options::OptionKeys::ddg::initial_repack

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::ddg::interface_ddg

Referenced by add_rosetta_options_7(), and main().

IntegerOptionKey const basic::options::OptionKeys::ddg::iterations

Referenced by add_rosetta_options_7(), MPDomainAssembly::apply(), main(), and my_main().

BooleanOptionKey const basic::options::OptionKeys::ddg::json

Referenced by add_rosetta_options_7(), numeric::read_tensor_from_file(), and numeric::write_tensor_to_file().

StringOptionKey const basic::options::OptionKeys::ddg::last_accepted_pose_dir

Referenced by add_rosetta_options_7(), and run_mc().

BooleanOptionKey const basic::options::OptionKeys::ddg::legacy

Referenced by add_rosetta_options_7(), and main().

BooleanOptionKey const basic::options::OptionKeys::ddg::local_opt_only

Referenced by add_rosetta_options_7(), and main().

IntegerOptionKey const basic::options::OptionKeys::ddg::lowest_x_decoys

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::ddg::mean

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::ddg::min

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::ddg::min_cst

Referenced by add_rosetta_options_7(), and main().

StringOptionKey const basic::options::OptionKeys::ddg::min_cst_weights

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::ddg::min_with_cst

Referenced by add_rosetta_options_7(), and run_mc().

StringOptionKey const basic::options::OptionKeys::ddg::minimization_patch

Referenced by add_rosetta_options_7(), and main().

StringOptionKey const basic::options::OptionKeys::ddg::minimization_scorefunction

Referenced by add_rosetta_options_7(), and main().

StringOptionKey const basic::options::OptionKeys::ddg::mut_file

Referenced by add_rosetta_options_7(), and main().

BooleanOptionKey const basic::options::OptionKeys::ddg::mut_only

Referenced by add_rosetta_options_7(), and main().

IntegerOptionKey const basic::options::OptionKeys::ddg::n_converged

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::ddg::nfrags

Referenced by add_rosetta_options_7(), DockFragmentsMover::cluster_frags(), gen_pep_bb_sequential(), and make_fragments().

BooleanOptionKey const basic::options::OptionKeys::ddg::no_bb_movement

Referenced by add_rosetta_options_7(), and run_mc().

BooleanOptionKey const basic::options::OptionKeys::ddg::no_constraints

Referenced by add_rosetta_options_7(), and optimize_pose().

IntegerOptionKey const basic::options::OptionKeys::ddg::ntrials

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::ddg::opt_input_structure

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::ddg::opt_radius

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::ddg::optimize_proline

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::ddg::optimize_wt

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::ddg::out

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::ddg::out_pdb_prefix

Referenced by add_rosetta_options_7(), main(), and minimize_with_constraints().

StringOptionKey const basic::options::OptionKeys::ddg::output_dir

Referenced by add_rosetta_options_7(), and minimize_with_constraints().

BooleanOptionKey const basic::options::OptionKeys::ddg::output_silent

Referenced by add_rosetta_options_7(), pyrosetta.io::poses_to_silent(), and rna_build_helix_test().

BooleanOptionKey const basic::options::OptionKeys::ddg::pack_until_converge

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::ddg::print_per_res_diff

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::ddg::ramp_repulsive

Referenced by add_rosetta_options_7(), and minimize_with_constraints().

BooleanOptionKey const basic::options::OptionKeys::ddg::rna_all_prot_sc_min_only

Referenced by add_rosetta_options_7(), and minimize_with_constraints().

BooleanOptionKey const basic::options::OptionKeys::ddg::sc_min_only

Referenced by add_rosetta_options_7(), minimize_with_constraints(), and setup_ca_constraints().

RealOptionKey const basic::options::OptionKeys::ddg::score_cutoff

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::ddg::suppress_checkpointing

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::ddg::temperature

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::ddg::use_rotamer_constraints_to_native

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::ddg::weight_file

Referenced by add_rosetta_options_7(), and main().

BooleanOptionKey const basic::options::OptionKeys::ddg::wt_only

Referenced by add_rosetta_options_7(), and main().