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Namespaces | Functions
OptionKeys.cc.gen8.hh File Reference

Namespaces

 docking
 
 docking::ligand
 
 docking::ligand::grid
 
 DomainAssembly
 
 dump_trajectory
 
 edensity
 
 enzdes
 
 epr_deer
 
 fast_loops
 
 flexpack
 
 flexpack::annealer
 
 flexPepDocking
 
 FloppyTail
 
 FloppyTail::short_tail
 
 flxbb
 
 flxbb::layer
 
 fold_and_dock
 
 fold_cst
 
 fold_from_loops
 

Functions

BooleanOptionKey const docking::enable_pymol_viewer ("docking:enable_pymol_viewer")
 
BooleanOptionKey const docking::SymDock_reduce_motif_dock_weights ("docking:SymDock_reduce_motif_dock_weights")
 
RealOptionKey const docking::SymDock_fa_rep_max ("docking:SymDock_fa_rep_max")
 
RealOptionKey const docking::SymDock_fa_sol_max ("docking:SymDock_fa_sol_max")
 
BooleanOptionKey const docking::ligand::ligand ("docking:ligand")
 
StringOptionKey const docking::ligand::protocol ("docking:ligand:protocol")
 
BooleanOptionKey const docking::ligand::soft_rep ("docking:ligand:soft_rep")
 
BooleanOptionKey const docking::ligand::tweak_sxfn ("docking:ligand:tweak_sxfn")
 
BooleanOptionKey const docking::ligand::old_estat ("docking:ligand:old_estat")
 
BooleanOptionKey const docking::ligand::random_conformer ("docking:ligand:random_conformer")
 
IntegerOptionKey const docking::ligand::improve_orientation ("docking:ligand:improve_orientation")
 
BooleanOptionKey const docking::ligand::mutate_same_name3 ("docking:ligand:mutate_same_name3")
 
RealOptionKey const docking::ligand::subset_to_keep ("docking:ligand:subset_to_keep")
 
RealOptionKey const docking::ligand::min_rms ("docking:ligand:min_rms")
 
IntegerOptionKey const docking::ligand::max_poses ("docking:ligand:max_poses")
 
BooleanOptionKey const docking::ligand::minimize_ligand ("docking:ligand:minimize_ligand")
 
RealOptionKey const docking::ligand::harmonic_torsions ("docking:ligand:harmonic_torsions")
 
BooleanOptionKey const docking::ligand::use_ambig_constraints ("docking:ligand:use_ambig_constraints")
 
IntegerOptionKey const docking::ligand::shear_moves ("docking:ligand:shear_moves")
 
BooleanOptionKey const docking::ligand::minimize_backbone ("docking:ligand:minimize_backbone")
 
RealOptionKey const docking::ligand::harmonic_Calphas ("docking:ligand:harmonic_Calphas")
 
RealOptionKey const docking::ligand::tether_ligand ("docking:ligand:tether_ligand")
 
RealVectorOptionKey const docking::ligand::start_from ("docking:ligand:start_from")
 
StringOptionKey const docking::ligand::option_file ("docking:ligand:option_file")
 
RealOptionKey const docking::ligand::ligand_ensemble ("docking:ligand:ligand_ensemble")
 
IntegerOptionKey const docking::ligand::iphold_cen_cycles ("docking:ligand:iphold_cen_cycles")
 
IntegerOptionKey const docking::ligand::iphold_fa_cycles ("docking:ligand:iphold_fa_cycles")
 
BooleanOptionKey const docking::ligand::grid::grid ("docking:ligand:grid")
 
FileOptionKey const docking::ligand::grid::grid_kin ("docking:ligand:grid:grid_kin")
 
FileOptionKey const docking::ligand::grid::grid_map ("docking:ligand:grid:grid_map")
 
BooleanOptionKey const DomainAssembly::DomainAssembly ("DomainAssembly")
 
BooleanOptionKey const DomainAssembly::da_setup ("DomainAssembly:da_setup")
 
FileOptionKey const DomainAssembly::da_setup_option_file ("DomainAssembly:da_setup_option_file")
 
FileOptionKey const DomainAssembly::da_setup_output_pdb ("DomainAssembly:da_setup_output_pdb")
 
FileOptionKey const DomainAssembly::da_linker_file ("DomainAssembly:da_linker_file")
 
FileOptionKey const DomainAssembly::da_require_buried ("DomainAssembly:da_require_buried")
 
FileOptionKey const DomainAssembly::da_start_pdb ("DomainAssembly:da_start_pdb")
 
BooleanOptionKey const DomainAssembly::run_fullatom ("DomainAssembly:run_fullatom")
 
BooleanOptionKey const DomainAssembly::run_centroid ("DomainAssembly:run_centroid")
 
BooleanOptionKey const DomainAssembly::run_centroid_abinitio ("DomainAssembly:run_centroid_abinitio")
 
IntegerOptionKey const DomainAssembly::da_nruns ("DomainAssembly:da_nruns")
 
IntegerOptionKey const DomainAssembly::da_start_pdb_num ("DomainAssembly:da_start_pdb_num")
 
FileOptionKey const DomainAssembly::da_linker_file_rna ("DomainAssembly:da_linker_file_rna")
 
StringOptionKey const DomainAssembly::residues_repack_only ("DomainAssembly:residues_repack_only")
 
FileOptionKey const DomainAssembly::da_eval_pose_map ("DomainAssembly:da_eval_pose_map")
 
BooleanOptionKey const dump_trajectory::dump_trajectory ("dump_trajectory")
 
StringOptionKey const dump_trajectory::prefix ("dump_trajectory:prefix")
 
BooleanOptionKey const dump_trajectory::gz ("dump_trajectory:gz")
 
IntegerOptionKey const dump_trajectory::stride ("dump_trajectory:stride")
 
BooleanOptionKey const edensity::edensity ("edensity")
 
BooleanOptionKey const edensity::debug ("edensity:debug")
 
StringOptionKey const edensity::mapfile ("edensity:mapfile")
 
RealOptionKey const edensity::mapreso ("edensity:mapreso")
 
RealOptionKey const edensity::grid_spacing ("edensity:grid_spacing")
 
RealOptionKey const edensity::centroid_density_mass ("edensity:centroid_density_mass")
 
IntegerOptionKey const edensity::sliding_window ("edensity:sliding_window")
 
BooleanOptionKey const edensity::cryoem_scatterers ("edensity:cryoem_scatterers")
 
RealOptionKey const edensity::force_apix ("edensity:force_apix")
 
RealOptionKey const edensity::fastdens_wt ("edensity:fastdens_wt")
 
RealVectorOptionKey const edensity::fastdens_params ("edensity:fastdens_params")
 
BooleanOptionKey const edensity::legacy_fastdens_score ("edensity:legacy_fastdens_score")
 
RealOptionKey const edensity::sliding_window_wt ("edensity:sliding_window_wt")
 
BooleanOptionKey const edensity::score_sliding_window_context ("edensity:score_sliding_window_context")
 
RealOptionKey const edensity::whole_structure_ca_wt ("edensity:whole_structure_ca_wt")
 
RealOptionKey const edensity::whole_structure_allatom_wt ("edensity:whole_structure_allatom_wt")
 
BooleanOptionKey const edensity::debug_derivatives ("edensity:debug_derivatives")
 
StringOptionKey const edensity::realign ("edensity:realign")
 
StringOptionKey const edensity::membrane_axis ("edensity:membrane_axis")
 
RealOptionKey const edensity::atom_mask ("edensity:atom_mask")
 
RealOptionKey const edensity::atom_mask_min ("edensity:atom_mask_min")
 
RealOptionKey const edensity::ca_mask ("edensity:ca_mask")
 
BooleanOptionKey const edensity::score_symm_complex ("edensity:score_symm_complex")
 
RealOptionKey const edensity::sc_scaling ("edensity:sc_scaling")
 
IntegerOptionKey const edensity::n_kbins ("edensity:n_kbins")
 
BooleanOptionKey const edensity::unmask_bb ("edensity:unmask_bb")
 
BooleanOptionKey const edensity::render_density ("edensity:render_density")
 
BooleanOptionKey const enzdes::enzdes ("enzdes")
 
StringOptionKey const enzdes::checkpoint ("enzdes:checkpoint")
 
BooleanOptionKey const enzdes::enz_score ("enzdes:enz_score")
 
BooleanOptionKey const enzdes::enz_repack ("enzdes:enz_repack")
 
BooleanOptionKey const enzdes::cst_opt ("enzdes:cst_opt")
 
BooleanOptionKey const enzdes::cst_predock ("enzdes:cst_predock")
 
RealOptionKey const enzdes::trans_magnitude ("enzdes:trans_magnitude")
 
RealOptionKey const enzdes::rot_magnitude ("enzdes:rot_magnitude")
 
RealOptionKey const enzdes::dock_trials ("enzdes:dock_trials")
 
BooleanOptionKey const enzdes::cst_min ("enzdes:cst_min")
 
BooleanOptionKey const enzdes::cst_design ("enzdes:cst_design")
 
IntegerOptionKey const enzdes::design_min_cycles ("enzdes:design_min_cycles")
 
BooleanOptionKey const enzdes::make_consensus_mutations ("enzdes:make_consensus_mutations")
 
BooleanOptionKey const enzdes::bb_min ("enzdes:bb_min")
 
RealOptionKey const enzdes::bb_min_allowed_dev ("enzdes:bb_min_allowed_dev")
 
RealOptionKey const enzdes::loop_bb_min_allowed_dev ("enzdes:loop_bb_min_allowed_dev")
 
RealOptionKey const enzdes::minimize_ligand_torsions ("enzdes:minimize_ligand_torsions")
 
RealOptionKey const enzdes::minimize_all_ligand_torsions ("enzdes:minimize_all_ligand_torsions")
 
BooleanOptionKey const enzdes::chi_min ("enzdes:chi_min")
 
BooleanOptionKey const enzdes::min_all_jumps ("enzdes:min_all_jumps")
 
BooleanOptionKey const enzdes::cst_dock ("enzdes:cst_dock")
 
BooleanOptionKey const enzdes::run_ligand_motifs ("enzdes:run_ligand_motifs")
 
BooleanOptionKey const enzdes::enz_debug ("enzdes:enz_debug")
 
FileOptionKey const enzdes::cstfile ("enzdes:cstfile")
 
FileOptionKey const enzdes::enz_loops_file ("enzdes:enz_loops_file")
 
BooleanOptionKey const enzdes::flexbb_protocol ("enzdes:flexbb_protocol")
 
BooleanOptionKey const enzdes::remodel_protocol ("enzdes:remodel_protocol")
 
BooleanOptionKey const enzdes::kic_loop_sampling ("enzdes:kic_loop_sampling")
 
StringOptionKey const enzdes::dump_loop_samples ("enzdes:dump_loop_samples")
 
BooleanOptionKey const enzdes::fix_catalytic_aa ("enzdes:fix_catalytic_aa")
 
IntegerOptionKey const enzdes::additional_packing_ligand_rb_confs ("enzdes:additional_packing_ligand_rb_confs")
 
IntegerOptionKey const enzdes::ex_catalytic_rot ("enzdes:ex_catalytic_rot")
 
IntegerOptionKey const enzdes::single_loop_ensemble_size ("enzdes:single_loop_ensemble_size")
 
IntegerOptionKey const enzdes::loop_generator_trials ("enzdes:loop_generator_trials")
 
BooleanOptionKey const enzdes::no_catres_min_in_loopgen ("enzdes:no_catres_min_in_loopgen")
 
RealOptionKey const enzdes::mc_kt_low ("enzdes:mc_kt_low")
 
RealOptionKey const enzdes::mc_kt_high ("enzdes:mc_kt_high")
 
RealOptionKey const enzdes::min_cacb_deviation ("enzdes:min_cacb_deviation")
 
RealOptionKey const enzdes::max_bb_deviation ("enzdes:max_bb_deviation")
 
RealOptionKey const enzdes::max_bb_deviation_from_startstruct ("enzdes:max_bb_deviation_from_startstruct")
 
IntegerOptionKey const enzdes::remodel_trials ("enzdes:remodel_trials")
 
BooleanOptionKey const enzdes::remodel_secmatch ("enzdes:remodel_secmatch")
 
BooleanOptionKey const enzdes::dump_inverse_rotamers ("enzdes:dump_inverse_rotamers")
 
RealOptionKey const enzdes::remodel_aggressiveness ("enzdes:remodel_aggressiveness")
 
RealOptionKey const enzdes::favor_native_res ("enzdes:favor_native_res")
 
BooleanOptionKey const enzdes::detect_design_interface ("enzdes:detect_design_interface")
 
BooleanOptionKey const enzdes::include_catres_in_interface_detection ("enzdes:include_catres_in_interface_detection")
 
BooleanOptionKey const enzdes::arg_sweep_interface ("enzdes:arg_sweep_interface")
 
RealOptionKey const enzdes::arg_sweep_cutoff ("enzdes:arg_sweep_cutoff")
 
RealOptionKey const enzdes::cut1 ("enzdes:cut1")
 
RealOptionKey const enzdes::cut2 ("enzdes:cut2")
 
RealOptionKey const enzdes::cut3 ("enzdes:cut3")
 
RealOptionKey const enzdes::cut4 ("enzdes:cut4")
 
RealOptionKey const enzdes::lig_packer_weight ("enzdes:lig_packer_weight")
 
BooleanOptionKey const enzdes::no_unconstrained_repack ("enzdes:no_unconstrained_repack")
 
RealOptionKey const enzdes::secmatch_Ecutoff ("enzdes:secmatch_Ecutoff")
 
FileOptionKey const enzdes::change_lig ("enzdes:change_lig")
 
StringOptionKey const enzdes::process_ligrot_separately ("enzdes:process_ligrot_separately")
 
BooleanOptionKey const enzdes::start_from_random_rb_conf ("enzdes:start_from_random_rb_conf")
 
RealOptionKey const enzdes::bb_bump_cutoff ("enzdes:bb_bump_cutoff")
 
RealOptionKey const enzdes::sc_sc_bump_cutoff ("enzdes:sc_sc_bump_cutoff")
 
BooleanOptionKey const enzdes::no_packstat_calculation ("enzdes:no_packstat_calculation")
 
StringOptionKey const enzdes::compare_native ("enzdes:compare_native")
 
BooleanOptionKey const enzdes::final_repack_without_ligand ("enzdes:final_repack_without_ligand")
 
BooleanOptionKey const enzdes::dump_final_repack_without_ligand_pdb ("enzdes:dump_final_repack_without_ligand_pdb")
 
BooleanOptionKey const enzdes::parser_read_cloud_pdb ("enzdes:parser_read_cloud_pdb")
 
BooleanOptionKey const epr_deer::epr_deer ("epr_deer")
 
FileVectorOptionKey const epr_deer::input_files ("epr_deer:input_files")
 
FileVectorOptionKey const epr_deer::coords_files ("epr_deer:coords_files")
 
BooleanOptionKey const epr_deer::print_data ("epr_deer:print_data")
 
BooleanOptionKey const fast_loops::fast_loops ("fast_loops")
 
RealOptionKey const fast_loops::window_accept_ratio ("fast_loops:window_accept_ratio")
 
IntegerOptionKey const fast_loops::nr_scored_sampling_passes ("fast_loops:nr_scored_sampling_passes")
 
IntegerOptionKey const fast_loops::nr_scored_fragments ("fast_loops:nr_scored_fragments")
 
IntegerOptionKey const fast_loops::min_breakout_good_loops ("fast_loops:min_breakout_good_loops")
 
IntegerOptionKey const fast_loops::min_breakout_fast_loops ("fast_loops:min_breakout_fast_loops")
 
IntegerOptionKey const fast_loops::min_good_loops ("fast_loops:min_good_loops")
 
IntegerOptionKey const fast_loops::min_fast_loops ("fast_loops:min_fast_loops")
 
RealOptionKey const fast_loops::vdw_delta ("fast_loops:vdw_delta")
 
IntegerOptionKey const fast_loops::give_up ("fast_loops:give_up")
 
RealOptionKey const fast_loops::chainbreak_max ("fast_loops:chainbreak_max")
 
FileOptionKey const fast_loops::fragsample_score ("fast_loops:fragsample_score")
 
FileOptionKey const fast_loops::fragsample_patch ("fast_loops:fragsample_patch")
 
FileOptionKey const fast_loops::overwrite_filter_scorefxn ("fast_loops:overwrite_filter_scorefxn")
 
FileOptionKey const fast_loops::patch_filter_scorefxn ("fast_loops:patch_filter_scorefxn")
 
FileOptionKey const fast_loops::filter_cst_file ("fast_loops:filter_cst_file")
 
RealOptionKey const fast_loops::filter_cst_weight ("fast_loops:filter_cst_weight")
 
FileOptionKey const fast_loops::fast_relax_sequence_file ("fast_loops:fast_relax_sequence_file")
 
BooleanOptionKey const flexpack::flexpack ("flexpack")
 
BooleanOptionKey const flexpack::annealer::annealer ("flexpack:annealer")
 
RealOptionKey const flexpack::annealer::inner_iteration_scale ("flexpack:annealer:inner_iteration_scale")
 
RealOptionKey const flexpack::annealer::outer_iteration_scale ("flexpack:annealer:outer_iteration_scale")
 
RealOptionKey const flexpack::annealer::fixbb_substitutions_scale ("flexpack:annealer:fixbb_substitutions_scale")
 
RealOptionKey const flexpack::annealer::pure_movebb_substitutions_scale ("flexpack:annealer:pure_movebb_substitutions_scale")
 
RealOptionKey const flexpack::annealer::rotsub_movebb_substitutions_scale ("flexpack:annealer:rotsub_movebb_substitutions_scale")
 
BooleanOptionKey const flexPepDocking::flexPepDocking ("flexPepDocking")
 
StringOptionKey const flexPepDocking::params_file ("flexPepDocking:params_file")
 
IntegerOptionKey const flexPepDocking::peptide_anchor ("flexPepDocking:peptide_anchor")
 
StringOptionKey const flexPepDocking::receptor_chain ("flexPepDocking:receptor_chain")
 
StringOptionKey const flexPepDocking::peptide_chain ("flexPepDocking:peptide_chain")
 
BooleanOptionKey const flexPepDocking::pep_fold_only ("flexPepDocking:pep_fold_only")
 
BooleanOptionKey const flexPepDocking::lowres_abinitio ("flexPepDocking:lowres_abinitio")
 
BooleanOptionKey const flexPepDocking::lowres_preoptimize ("flexPepDocking:lowres_preoptimize")
 
BooleanOptionKey const flexPepDocking::flexPepDockingMinimizeOnly ("flexPepDocking:flexPepDockingMinimizeOnly")
 
BooleanOptionKey const flexPepDocking::extend_peptide ("flexPepDocking:extend_peptide")
 
BooleanOptionKey const flexPepDocking::place_peptide_on_binding_site ("flexPepDocking:place_peptide_on_binding_site")
 
IntegerOptionKey const flexPepDocking::sample_pcs ("flexPepDocking:sample_pcs")
 
BooleanOptionKey const flexPepDocking::SlideIntoContact ("flexPepDocking:SlideIntoContact")
 
BooleanOptionKey const flexPepDocking::recalculate_foldtree ("flexPepDocking:recalculate_foldtree")
 
BooleanOptionKey const flexPepDocking::pep_refine ("flexPepDocking:pep_refine")
 
BooleanOptionKey const flexPepDocking::rbMCM ("flexPepDocking:rbMCM")
 
BooleanOptionKey const flexPepDocking::torsionsMCM ("flexPepDocking:torsionsMCM")
 
BooleanOptionKey const flexPepDocking::peptide_loop_model ("flexPepDocking:peptide_loop_model")
 
BooleanOptionKey const flexPepDocking::backrub_peptide ("flexPepDocking:backrub_peptide")
 
BooleanOptionKey const flexPepDocking::boost_fa_atr ("flexPepDocking:boost_fa_atr")
 
BooleanOptionKey const flexPepDocking::ramp_fa_rep ("flexPepDocking:ramp_fa_rep")
 
BooleanOptionKey const flexPepDocking::ramp_rama ("flexPepDocking:ramp_rama")
 
BooleanOptionKey const flexPepDocking::flexpep_score_only ("flexPepDocking:flexpep_score_only")
 
FileOptionKey const flexPepDocking::ref_startstruct ("flexPepDocking:ref_startstruct")
 
BooleanOptionKey const flexPepDocking::use_cen_score ("flexPepDocking:use_cen_score")
 
BooleanOptionKey const flexPepDocking::design_peptide ("flexPepDocking:design_peptide")
 
IntegerOptionKey const flexPepDocking::rep_ramp_cycles ("flexPepDocking:rep_ramp_cycles")
 
IntegerOptionKey const flexPepDocking::mcm_cycles ("flexPepDocking:mcm_cycles")
 
RealOptionKey const flexPepDocking::random_phi_psi_preturbation ("flexPepDocking:random_phi_psi_preturbation")
 
RealOptionKey const flexPepDocking::smove_angle_range ("flexPepDocking:smove_angle_range")
 
BooleanOptionKey const flexPepDocking::min_receptor_bb ("flexPepDocking:min_receptor_bb")
 
RealOptionKey const flexPepDocking::random_trans_start ("flexPepDocking:random_trans_start")
 
RealOptionKey const flexPepDocking::random_rot_start ("flexPepDocking:random_rot_start")
 
BooleanOptionKey const flexPepDocking::flexpep_prepack ("flexPepDocking:flexpep_prepack")
 
BooleanOptionKey const flexPepDocking::flexpep_noprepack1 ("flexPepDocking:flexpep_noprepack1")
 
BooleanOptionKey const flexPepDocking::flexpep_noprepack2 ("flexPepDocking:flexpep_noprepack2")
 
RealOptionKey const flexPepDocking::score_filter ("flexPepDocking:score_filter")
 
IntegerOptionKey const flexPepDocking::hb_filter ("flexPepDocking:hb_filter")
 
IntegerOptionKey const flexPepDocking::hotspot_filter ("flexPepDocking:hotspot_filter")
 
StringOptionKey const flexPepDocking::frag5 ("flexPepDocking:frag5")
 
RealOptionKey const flexPepDocking::frag9_weight ("flexPepDocking:frag9_weight")
 
RealOptionKey const flexPepDocking::frag5_weight ("flexPepDocking:frag5_weight")
 
RealOptionKey const flexPepDocking::frag3_weight ("flexPepDocking:frag3_weight")
 
BooleanOptionKey const flexPepDocking::pSer2Asp_centroid ("flexPepDocking:pSer2Asp_centroid")
 
BooleanOptionKey const flexPepDocking::pSer2Glu_centroid ("flexPepDocking:pSer2Glu_centroid")
 
BooleanOptionKey const flexPepDocking::dumpPDB_abinitio ("flexPepDocking:dumpPDB_abinitio")
 
BooleanOptionKey const flexPepDocking::dumpPDB_lowres ("flexPepDocking:dumpPDB_lowres")
 
BooleanOptionKey const flexPepDocking::dumpPDB_hires ("flexPepDocking:dumpPDB_hires")
 
BooleanOptionKey const FloppyTail::FloppyTail ("FloppyTail")
 
IntegerOptionKey const FloppyTail::flexible_start_resnum ("FloppyTail:flexible_start_resnum")
 
IntegerOptionKey const FloppyTail::flexible_stop_resnum ("FloppyTail:flexible_stop_resnum")
 
StringOptionKey const FloppyTail::flexible_chain ("FloppyTail:flexible_chain")
 
RealOptionKey const FloppyTail::shear_on ("FloppyTail:shear_on")
 
BooleanOptionKey const FloppyTail::pair_off ("FloppyTail:pair_off")
 
BooleanOptionKey const FloppyTail::publication ("FloppyTail:publication")
 
BooleanOptionKey const FloppyTail::C_root ("FloppyTail:C_root")
 
BooleanOptionKey const FloppyTail::COM_root ("FloppyTail:COM_root")
 
BooleanOptionKey const FloppyTail::force_linear_fold_tree ("FloppyTail:force_linear_fold_tree")
 
BooleanOptionKey const FloppyTail::debug ("FloppyTail:debug")
 
StringOptionKey const FloppyTail::cen_weights ("FloppyTail:cen_weights")
 
BooleanOptionKey const FloppyTail::perturb_show ("FloppyTail:perturb_show")
 
IntegerOptionKey const FloppyTail::perturb_cycles ("FloppyTail:perturb_cycles")
 
RealOptionKey const FloppyTail::perturb_temp ("FloppyTail:perturb_temp")
 
IntegerOptionKey const FloppyTail::refine_cycles ("FloppyTail:refine_cycles")
 
RealOptionKey const FloppyTail::refine_temp ("FloppyTail:refine_temp")
 
IntegerOptionKey const FloppyTail::refine_repack_cycles ("FloppyTail:refine_repack_cycles")
 
BooleanOptionKey const FloppyTail::short_tail::short_tail ("FloppyTail:short_tail")
 
RealOptionKey const FloppyTail::short_tail::short_tail_fraction ("FloppyTail:short_tail:short_tail_fraction")
 
RealOptionKey const FloppyTail::short_tail::short_tail_off ("FloppyTail:short_tail:short_tail_off")
 
BooleanOptionKey const flxbb::flxbb ("flxbb")
 
BooleanOptionKey const flxbb::view ("flxbb:view")
 
IntegerOptionKey const flxbb::ncycle ("flxbb:ncycle")
 
RealOptionKey const flxbb::constraints_sheet ("flxbb:constraints_sheet")
 
BooleanOptionKey const flxbb::constraints_sheet_include_cacb_pseudotorsion ("flxbb:constraints_sheet_include_cacb_pseudotorsion")
 
RealOptionKey const flxbb::constraints_NtoC ("flxbb:constraints_NtoC")
 
IntegerOptionKey const flxbb::filter_trial ("flxbb:filter_trial")
 
StringOptionKey const flxbb::filter_type ("flxbb:filter_type")
 
FileOptionKey const flxbb::blueprint ("flxbb:blueprint")
 
BooleanOptionKey const flxbb::movemap_from_blueprint ("flxbb:movemap_from_blueprint")
 
StringOptionKey const flxbb::layer::layer ("flxbb:layer")
 
BooleanOptionKey const fold_and_dock::fold_and_dock ("fold_and_dock")
 
BooleanOptionKey const fold_and_dock::move_anchor_points ("fold_and_dock:move_anchor_points")
 
BooleanOptionKey const fold_and_dock::set_anchor_at_closest_point ("fold_and_dock:set_anchor_at_closest_point")
 
BooleanOptionKey const fold_and_dock::rotate_anchor_to_x ("fold_and_dock:rotate_anchor_to_x")
 
RealOptionKey const fold_and_dock::trans_mag_smooth ("fold_and_dock:trans_mag_smooth")
 
RealOptionKey const fold_and_dock::rot_mag_smooth ("fold_and_dock:rot_mag_smooth")
 
RealOptionKey const fold_and_dock::rb_rot_magnitude ("fold_and_dock:rb_rot_magnitude")
 
RealOptionKey const fold_and_dock::rb_trans_magnitude ("fold_and_dock:rb_trans_magnitude")
 
IntegerOptionKey const fold_and_dock::rigid_body_cycles ("fold_and_dock:rigid_body_cycles")
 
RealOptionKey const fold_and_dock::move_anchor_frequency ("fold_and_dock:move_anchor_frequency")
 
RealOptionKey const fold_and_dock::rigid_body_frequency ("fold_and_dock:rigid_body_frequency")
 
BooleanOptionKey const fold_and_dock::rigid_body_disable_mc ("fold_and_dock:rigid_body_disable_mc")
 
RealOptionKey const fold_and_dock::slide_contact_frequency ("fold_and_dock:slide_contact_frequency")
 
BooleanOptionKey const fold_cst::fold_cst ("fold_cst")
 
RealOptionKey const fold_cst::constraint_skip_rate ("fold_cst:constraint_skip_rate")
 
IntegerOptionKey const fold_cst::violation_skip_basis ("fold_cst:violation_skip_basis")
 
IntegerOptionKey const fold_cst::violation_skip_ignore ("fold_cst:violation_skip_ignore")
 
BooleanOptionKey const fold_cst::keep_skipped_csts ("fold_cst:keep_skipped_csts")
 
BooleanOptionKey const fold_cst::no_minimize ("fold_cst:no_minimize")
 
BooleanOptionKey const fold_cst::force_minimize ("fold_cst:force_minimize")
 
RealVectorOptionKey const fold_cst::seq_sep_stages ("fold_cst:seq_sep_stages")
 
IntegerOptionKey const fold_cst::reramp_cst_cycles ("fold_cst:reramp_cst_cycles")
 
RealOptionKey const fold_cst::reramp_start_cstweight ("fold_cst:reramp_start_cstweight")
 
IntegerOptionKey const fold_cst::reramp_iterations ("fold_cst:reramp_iterations")
 
BooleanOptionKey const fold_cst::skip_on_noviolation_in_stage1 ("fold_cst:skip_on_noviolation_in_stage1")
 
RealOptionKey const fold_cst::stage1_ramp_cst_cycle_factor ("fold_cst:stage1_ramp_cst_cycle_factor")
 
RealOptionKey const fold_cst::stage2_constraint_threshold ("fold_cst:stage2_constraint_threshold")
 
BooleanOptionKey const fold_cst::ignore_sequence_seperation ("fold_cst:ignore_sequence_seperation")
 
BooleanOptionKey const fold_cst::no_recover_low_at_constraint_switch ("fold_cst:no_recover_low_at_constraint_switch")
 
BooleanOptionKey const fold_cst::ramp_coord_cst ("fold_cst:ramp_coord_cst")
 
BooleanOptionKey const fold_from_loops::fold_from_loops ("fold_from_loops")
 
BooleanOptionKey const fold_from_loops::native_ca_cst ("fold_from_loops:native_ca_cst")
 
FileOptionKey const fold_from_loops::swap_loops ("fold_from_loops:swap_loops")
 
StringOptionKey const fold_from_loops::checkpoint ("fold_from_loops:checkpoint")
 
RealOptionKey const fold_from_loops::ca_csts_dev ("fold_from_loops:ca_csts_dev")
 
IntegerOptionKey const fold_from_loops::add_relax_cycles ("fold_from_loops:add_relax_cycles")