Rosetta  2020.37
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Functions
rna_predict_chem_map.cc File Reference
#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/VariantType.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/chemical/rna/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/rna/data/RNA_DMS_Potential.hh>
#include <core/io/rna/RDAT.hh>
#include <devel/init.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/import_pose/import_pose.hh>
#include <protocols/rna/denovo/util.hh>
#include <protocols/viewer/viewers.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/database/open.hh>
#include <utility/vector1.hh>
#include <utility/tools/make_vector1.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/izstream.hh>
#include <utility/file/FileName.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/string.functions.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <core/conformation/Conformation.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/MathVector.hh>

Functions

void get_max_and_intervals (std::set< Real > const &DMS_values, utility::vector1< Real > const &logL_values, Real &DMS_mean, Real &DMS_std, Real &DMS_maxL, Real &DMS_interval_low, Real &DMS_interval_high, Real const )
 
void get_logL_DMS (pose::Pose &pose, vector1< vector1< Real > > &logL_values, std::set< Real > &DMS_values, vector1< Size > &probed_res)
 
void predict_chem_map_test ()
 
void * my_main (void *)
 
int main (int argc, char *argv[])
 

Detailed Description

Author
Rhiju, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Function Documentation

void get_logL_DMS ( pose::Pose pose,
vector1< vector1< Real > > &  logL_values,
std::set< Real > &  DMS_values,
vector1< Size > &  probed_res 
)

Referenced by predict_chem_map_test().

void get_max_and_intervals ( std::set< Real > const &  DMS_values,
utility::vector1< Real > const &  logL_values,
Real &  DMS_mean,
Real &  DMS_std,
Real &  DMS_maxL,
Real &  DMS_interval_low,
Real &  DMS_interval_high,
Real  const 
)
int main ( int  argc,
char *  argv[] 
)
void* my_main ( void *  )
void predict_chem_map_test ( )