![]() |
Rosetta
2020.50
|
Namespaces | |
design | |
BooleanOptionKey const basic::options::OptionKeys::antibody::all_atom_mode_kink_constraint |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::allow_omega_mismatches_for_north_clusters |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::antibody |
Referenced by add_rosetta_options_5(), PackingAngle::apply(), and main().
BooleanOptionKey const basic::options::OptionKeys::antibody::auto_generate_h3_kink_constraint |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::auto_generate_kink_constraint |
Referenced by add_rosetta_options_5().
RealOptionKey const basic::options::OptionKeys::antibody::bfactor_cutoff |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::blastp |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::camelid |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::camelid_constraints |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::cdr_definition |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::centroid_refine |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::check_cdr_chainbreaks |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::check_cdr_pep_bond_geom |
Referenced by add_rosetta_options_5().
IntegerOptionKey const basic::options::OptionKeys::antibody::cluster_csts_stats_cutoff |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::constrain_cter |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::constrain_vlvh_qq |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::exclude_homologs |
Referenced by add_rosetta_options_5().
RealOptionKey const basic::options::OptionKeys::antibody::exclude_homologs_cdr_cutoff |
Referenced by add_rosetta_options_5().
RealOptionKey const basic::options::OptionKeys::antibody::exclude_homologs_fr_cutoff |
Referenced by add_rosetta_options_5().
StringVectorOptionKey const basic::options::OptionKeys::antibody::exclude_pdbs |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::extend_h3_before_modeling |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::force_use_of_cluster_csts_with_outliers |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::frh_template |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::frl_template |
Referenced by add_rosetta_options_5().
RealOptionKey const basic::options::OptionKeys::antibody::general_dihedral_cst_phi_sd |
Referenced by add_rosetta_options_5().
RealOptionKey const basic::options::OptionKeys::antibody::general_dihedral_cst_psi_sd |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::graft_h1 |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::graft_h2 |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::graft_h3 |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::graft_l1 |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::graft_l2 |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::graft_l3 |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::grafting_database |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::h1_template |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::h2_template |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::h3_filter |
Referenced by add_rosetta_options_5().
RealOptionKey const basic::options::OptionKeys::antibody::h3_filter_tolerance |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::h3_loop_csts_hr |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::h3_loop_csts_lr |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::h3_no_stem_graft |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::h3_template |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::input_ab_scheme |
Referenced by add_rosetta_options_5().
FileOptionKey const basic::options::OptionKeys::antibody::input_fv |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::json_cdr |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::l1_template |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::l2_template |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::l3_template |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::light_chain |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::light_heavy_template |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::model_h3 |
Referenced by add_rosetta_options_5().
IntegerOptionKey const basic::options::OptionKeys::antibody::n_multi_templates |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::numbering_scheme |
Referenced by add_rosetta_options_5().
RealOptionKey const basic::options::OptionKeys::antibody::ocd_cutoff |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::output_ab_scheme |
Referenced by add_rosetta_options_5(), and IdentifyCDRClusters::apply().
BooleanOptionKey const basic::options::OptionKeys::antibody::packonly_after_graft |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::prefix |
Referenced by add_rosetta_options_5().
StringOptionKey const basic::options::OptionKeys::antibody::preprocessing_script_version |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::refine_h3 |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::rt_min |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::run_snugdock |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::sc_min |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::snug_loops |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::snugfit |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::stem_optimize |
Referenced by add_rosetta_options_5().
IntegerOptionKey const basic::options::OptionKeys::antibody::stem_optimize_size |
Referenced by add_rosetta_options_5().
BooleanOptionKey const basic::options::OptionKeys::antibody::use_mean_cluster_cst_data |
Referenced by add_rosetta_options_5().