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basic::options::OptionKeys::antibody Namespace Reference

Namespaces

 design
 

Variables

BooleanOptionKey const antibody
 
StringOptionKey const input_ab_scheme
 
StringOptionKey const output_ab_scheme
 
StringOptionKey const cdr_definition
 
StringOptionKey const light_chain
 
BooleanOptionKey const check_cdr_chainbreaks
 
BooleanOptionKey const check_cdr_pep_bond_geom
 
BooleanOptionKey const constrain_cter
 
BooleanOptionKey const auto_generate_kink_constraint
 
BooleanOptionKey const all_atom_mode_kink_constraint
 
StringOptionKey const numbering_scheme
 
BooleanOptionKey const graft_l1
 
StringOptionKey const l1_template
 
BooleanOptionKey const graft_l2
 
StringOptionKey const l2_template
 
BooleanOptionKey const graft_l3
 
StringOptionKey const l3_template
 
BooleanOptionKey const graft_h1
 
StringOptionKey const h1_template
 
BooleanOptionKey const graft_h2
 
StringOptionKey const h2_template
 
BooleanOptionKey const graft_h3
 
StringOptionKey const h3_template
 
StringOptionKey const light_heavy_template
 
StringOptionKey const frl_template
 
StringOptionKey const frh_template
 
BooleanOptionKey const run_snugdock
 
BooleanOptionKey const h3_no_stem_graft
 
BooleanOptionKey const packonly_after_graft
 
BooleanOptionKey const stem_optimize
 
IntegerOptionKey const stem_optimize_size
 
StringOptionKey const preprocessing_script_version
 
BooleanOptionKey const model_h3
 
BooleanOptionKey const snugfit
 
BooleanOptionKey const refine_h3
 
BooleanOptionKey const h3_filter
 
RealOptionKey const h3_filter_tolerance
 
BooleanOptionKey const sc_min
 
BooleanOptionKey const rt_min
 
BooleanOptionKey const extend_h3_before_modeling
 
StringOptionKey const centroid_refine
 
BooleanOptionKey const h3_loop_csts_lr
 
BooleanOptionKey const h3_loop_csts_hr
 
BooleanOptionKey const auto_generate_h3_kink_constraint
 
BooleanOptionKey const constrain_vlvh_qq
 
BooleanOptionKey const snug_loops
 
FileOptionKey const input_fv
 
BooleanOptionKey const camelid
 
BooleanOptionKey const camelid_constraints
 
BooleanOptionKey const use_mean_cluster_cst_data
 
BooleanOptionKey const force_use_of_cluster_csts_with_outliers
 
IntegerOptionKey const cluster_csts_stats_cutoff
 
RealOptionKey const general_dihedral_cst_phi_sd
 
RealOptionKey const general_dihedral_cst_psi_sd
 
BooleanOptionKey const allow_omega_mismatches_for_north_clusters
 
StringOptionKey const prefix
 
StringOptionKey const grafting_database
 
StringOptionKey const blastp
 
StringVectorOptionKey const exclude_pdbs
 
BooleanOptionKey const exclude_homologs
 
RealOptionKey const exclude_homologs_cdr_cutoff
 
RealOptionKey const exclude_homologs_fr_cutoff
 
RealOptionKey const ocd_cutoff
 
RealOptionKey const bfactor_cutoff
 
IntegerOptionKey const n_multi_templates
 
StringOptionKey const json_cdr
 

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::antibody::all_atom_mode_kink_constraint

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::allow_omega_mismatches_for_north_clusters

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::antibody
BooleanOptionKey const basic::options::OptionKeys::antibody::auto_generate_h3_kink_constraint

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::auto_generate_kink_constraint

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::antibody::bfactor_cutoff

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::blastp

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::camelid

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::camelid_constraints

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::cdr_definition

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::centroid_refine

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::check_cdr_chainbreaks

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::check_cdr_pep_bond_geom

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::antibody::cluster_csts_stats_cutoff

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::constrain_cter

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::constrain_vlvh_qq

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::exclude_homologs

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::antibody::exclude_homologs_cdr_cutoff

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::antibody::exclude_homologs_fr_cutoff

Referenced by add_rosetta_options_5().

StringVectorOptionKey const basic::options::OptionKeys::antibody::exclude_pdbs

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::extend_h3_before_modeling

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::force_use_of_cluster_csts_with_outliers

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::frh_template

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::frl_template

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::antibody::general_dihedral_cst_phi_sd

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::antibody::general_dihedral_cst_psi_sd

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::graft_h1

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::graft_h2

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::graft_h3

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::graft_l1

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::graft_l2

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::graft_l3

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::grafting_database

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::h1_template

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::h2_template

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::h3_filter

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::antibody::h3_filter_tolerance

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::h3_loop_csts_hr

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::h3_loop_csts_lr

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::h3_no_stem_graft

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::h3_template

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::input_ab_scheme

Referenced by add_rosetta_options_5().

FileOptionKey const basic::options::OptionKeys::antibody::input_fv

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::json_cdr

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::l1_template

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::l2_template

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::l3_template

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::light_chain

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::light_heavy_template

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::model_h3

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::antibody::n_multi_templates

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::numbering_scheme

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::antibody::ocd_cutoff

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::output_ab_scheme
BooleanOptionKey const basic::options::OptionKeys::antibody::packonly_after_graft

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::prefix

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::preprocessing_script_version

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::refine_h3

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::rt_min

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::run_snugdock

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::sc_min

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::snug_loops

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::snugfit

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::stem_optimize

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::antibody::stem_optimize_size

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::use_mean_cluster_cst_data

Referenced by add_rosetta_options_5().