Rosetta  2020.28
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Namespaces | Variables
basic::options::OptionKeys::stepwise Namespace Reference

Namespaces

 monte_carlo
 
 polar_hydrogens
 
 protein
 
 rna
 

Variables

BooleanOptionKey const stepwise
 
StringVectorOptionKey const s1
 
StringVectorOptionKey const s2
 
StringVectorOptionKey const silent1
 
StringVectorOptionKey const silent2
 
StringVectorOptionKey const tags1
 
StringVectorOptionKey const tags2
 
IntegerVectorOptionKey const slice_res1
 
IntegerVectorOptionKey const slice_res2
 
IntegerVectorOptionKey const input_res1
 
IntegerVectorOptionKey const input_res2
 
BooleanOptionKey const backbone_only1
 
BooleanOptionKey const backbone_only2
 
IntegerVectorOptionKey const fixed_res
 
BooleanOptionKey const test_encapsulation
 
BooleanOptionKey const choose_random
 
IntegerOptionKey const num_random_samples
 
IntegerOptionKey const max_tries_multiplier_for_ccd
 
IntegerOptionKey const num_pose_minimize
 
BooleanOptionKey const atr_rep_screen
 
BooleanOptionKey const atr_rep_screen_for_docking
 
StringOptionKey const align_pdb
 
StringOptionKey const new_align_pdb
 
BooleanOptionKey const enumerate
 
BooleanOptionKey const preminimize
 
BooleanOptionKey const skip_preminimize
 
BooleanOptionKey const minimize_waters
 
BooleanOptionKey const test_all_moves
 
BooleanOptionKey const new_move_selector
 
BooleanOptionKey const dump
 
BooleanOptionKey const VERBOSE
 
BooleanOptionKey const use_green_packer
 
RealOptionKey const rmsd_screen
 
BooleanOptionKey const skip_minimize
 
BooleanOptionKey const virtualize_packable_moieties_in_screening_pose
 
StringOptionKey const minimizer_mode
 
StringOptionKey const sampler_silent_file
 
BooleanOptionKey const superimpose_over_all
 
ResidueChainVectorOptionKey const alignment_anchor_res
 
StringVectorOptionKey const move
 
StringOptionKey const min_type
 
RealOptionKey const min_tolerance
 
BooleanOptionKey const output_minimized_pose_list
 
BooleanOptionKey const virtualize_free_moieties_in_native
 
BooleanOptionKey const output_cluster_size
 
BooleanOptionKey const lores
 
BooleanOptionKey const verbose_sampler
 
BooleanOptionKey const pack_protein_side_chains
 
IntegerVectorOptionKey const definitely_virtualize
 
BooleanOptionKey const force_moving_res_for_erraser
 
BooleanOptionKey const boltzmann_choice_post_enumerated_minimize
 

Variable Documentation

StringOptionKey const basic::options::OptionKeys::stepwise::align_pdb
ResidueChainVectorOptionKey const basic::options::OptionKeys::stepwise::alignment_anchor_res

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::stepwise::atr_rep_screen
BooleanOptionKey const basic::options::OptionKeys::stepwise::atr_rep_screen_for_docking

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::stepwise::backbone_only1

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::stepwise::backbone_only2

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::stepwise::boltzmann_choice_post_enumerated_minimize

Referenced by add_rosetta_options_14().

BooleanOptionKey const basic::options::OptionKeys::stepwise::choose_random
IntegerVectorOptionKey const basic::options::OptionKeys::stepwise::definitely_virtualize

Referenced by add_rosetta_options_14().

BooleanOptionKey const basic::options::OptionKeys::stepwise::dump
BooleanOptionKey const basic::options::OptionKeys::stepwise::enumerate
IntegerVectorOptionKey const basic::options::OptionKeys::stepwise::fixed_res

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::stepwise::force_moving_res_for_erraser

Referenced by add_rosetta_options_14().

IntegerVectorOptionKey const basic::options::OptionKeys::stepwise::input_res1

Referenced by add_rosetta_options_13().

IntegerVectorOptionKey const basic::options::OptionKeys::stepwise::input_res2

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::stepwise::lores
IntegerOptionKey const basic::options::OptionKeys::stepwise::max_tries_multiplier_for_ccd

Referenced by add_rosetta_options_13().

RealOptionKey const basic::options::OptionKeys::stepwise::min_tolerance

Referenced by add_rosetta_options_13().

StringOptionKey const basic::options::OptionKeys::stepwise::min_type

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::stepwise::minimize_waters

Referenced by add_rosetta_options_13().

StringOptionKey const basic::options::OptionKeys::stepwise::minimizer_mode

Referenced by add_rosetta_options_13().

StringVectorOptionKey const basic::options::OptionKeys::stepwise::move
StringOptionKey const basic::options::OptionKeys::stepwise::new_align_pdb

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::stepwise::new_move_selector

Referenced by add_rosetta_options_13(), and main().

IntegerOptionKey const basic::options::OptionKeys::stepwise::num_pose_minimize

Referenced by add_rosetta_options_13(), and main().

IntegerOptionKey const basic::options::OptionKeys::stepwise::num_random_samples

Referenced by add_rosetta_options_13(), and main().

BooleanOptionKey const basic::options::OptionKeys::stepwise::output_cluster_size

Referenced by add_rosetta_options_14().

BooleanOptionKey const basic::options::OptionKeys::stepwise::output_minimized_pose_list

Referenced by add_rosetta_options_14().

BooleanOptionKey const basic::options::OptionKeys::stepwise::pack_protein_side_chains

Referenced by add_rosetta_options_14().

BooleanOptionKey const basic::options::OptionKeys::stepwise::preminimize

Referenced by add_rosetta_options_13(), and main().

RealOptionKey const basic::options::OptionKeys::stepwise::rmsd_screen
StringVectorOptionKey const basic::options::OptionKeys::stepwise::s1
StringVectorOptionKey const basic::options::OptionKeys::stepwise::s2
StringOptionKey const basic::options::OptionKeys::stepwise::sampler_silent_file

Referenced by add_rosetta_options_13().

StringVectorOptionKey const basic::options::OptionKeys::stepwise::silent1

Referenced by add_rosetta_options_13().

StringVectorOptionKey const basic::options::OptionKeys::stepwise::silent2

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::stepwise::skip_minimize

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::stepwise::skip_preminimize

Referenced by add_rosetta_options_13().

IntegerVectorOptionKey const basic::options::OptionKeys::stepwise::slice_res1

Referenced by add_rosetta_options_13().

IntegerVectorOptionKey const basic::options::OptionKeys::stepwise::slice_res2

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::stepwise::stepwise
BooleanOptionKey const basic::options::OptionKeys::stepwise::superimpose_over_all
StringVectorOptionKey const basic::options::OptionKeys::stepwise::tags1

Referenced by add_rosetta_options_13().

StringVectorOptionKey const basic::options::OptionKeys::stepwise::tags2

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::stepwise::test_all_moves

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::stepwise::test_encapsulation
BooleanOptionKey const basic::options::OptionKeys::stepwise::use_green_packer

Referenced by add_rosetta_options_13(), and main().

BooleanOptionKey const basic::options::OptionKeys::stepwise::VERBOSE
BooleanOptionKey const basic::options::OptionKeys::stepwise::verbose_sampler

Referenced by add_rosetta_options_14().

BooleanOptionKey const basic::options::OptionKeys::stepwise::virtualize_free_moieties_in_native
BooleanOptionKey const basic::options::OptionKeys::stepwise::virtualize_packable_moieties_in_screening_pose

Referenced by add_rosetta_options_13().