Rosetta  2019.47
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Typedefs | Functions | Variables
make_motif_tables.cc File Reference
#include <core/scoring/motif/motif_hash_stuff.hh>
#include <core/scoring/motif/util.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <basic/Tracer.hh>
#include <basic/database/open.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/mh.OptionKeys.gen.hh>
#include <basic/options/keys/symmetry.OptionKeys.gen.hh>
#include <basic/options/option_macros.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/symmetry/util.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/conformation/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/Pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/motif/reference_frames.hh>
#include <core/pose/util.hh>
#include <core/pose/symmetry/util.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreTypeManager.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/scoring/etable/Etable.hh>
#include <core/scoring/hbonds/HBondOptions.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/scoring/hbonds/hbonds.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/packing/compute_holes_score.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/sasa.hh>
#include <core/scoring/symmetry/SymmetricScoreFunction.hh>
#include <devel/init.hh>
#include <numeric/conversions.hh>
#include <numeric/model_quality/rms.hh>
#include <numeric/random/random.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/xyz.io.hh>
#include <numeric/xyzVector.hh>
#include <protocols/idealize/IdealizeMover.hh>
#include <protocols/sic_dock/SICFast.hh>
#include <protocols/sic_dock/util.hh>
#include <protocols/sic_dock/read_biounit.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/constraint_movers/AddConstraintsToCurrentConformationMover.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility/fixedsizearray1.hh>
#include <utility/file/file_sys_util.hh>
#include <numeric/geometry/hashing/SixDHasher.hh>
#include <numeric/HomogeneousTransform.hh>
#include <boost/foreach.hpp>

Typedefs

typedef numeric::xyzVector
< core::Real > 
Vec
 
typedef numeric::xyzMatrix
< core::Real > 
Mat
 
typedef numeric::xyzTransform
< core::Real > 
Xform
 
typedef utility::vector1
< core::id::AtomID > 
AIDs
 

Functions

Size sicdock_max_threads ()
 
Size sicdock_num_threads ()
 
Size sicdock_thread_num ()
 
void print_motifs (std::ostream &out)
 
void merge_motifs ()
 
template<class T >
T sqr (T const &x)
 
void harvest_scores ()
 
void print_scores ()
 
bool harvest_motifs_one (ResPairMotifs &motifs, string const &tag0, Pose const &pose, core::scoring::dssp::Dssp &dssp, Size const &ir, core::scoring::EnergyEdge const &edge, vector1< Real > const &, vector1< Real > const &bfactors, vector1< Real > const &, vector1< Real > const &nbrs, int &nbad, int &, int &nbadocc, int &, int &)
 
void harvest_motifs ()
 
int main (int argc, char *argv[])
 

Variables

static basic::Tracer TR ("motif_hash_util")
 

Typedef Documentation

typedef utility::vector1<core::id::AtomID> AIDs

Function Documentation

void harvest_motifs ( )
inline
bool harvest_motifs_one ( ResPairMotifs &  motifs,
string const &  tag0,
Pose const &  pose,
core::scoring::dssp::Dssp &  dssp,
Size const &  ir,
core::scoring::EnergyEdge const &  edge,
vector1< Real > const &  ,
vector1< Real > const &  bfactors,
vector1< Real > const &  ,
vector1< Real > const &  nbrs,
int nbad,
int ,
int nbadocc,
int ,
int  
)
inline
void harvest_scores ( )
inline
int main ( int  argc,
char *  argv[] 
)
void merge_motifs ( )
inline
void print_motifs ( std::ostream &  out)
inline
void print_scores ( )
inline
Size sicdock_max_threads ( )
inline

Referenced by harvest_scores().

Size sicdock_num_threads ( )
inline
Size sicdock_thread_num ( )
inline

Referenced by harvest_scores().

template<class T >
T sqr ( T const &  x)

Variable Documentation

basic::Tracer TR("motif_hash_util")
static