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Namespaces | Functions
AnchoredDesign Namespace Reference

Namespaces

 akash
 
 filters
 
 testing
 

Functions

BooleanOptionKey const AnchoredDesign ("AnchoredDesign")
 
FileOptionKey const anchor ("AnchoredDesign:anchor")
 
BooleanOptionKey const allow_anchor_repack ("AnchoredDesign:allow_anchor_repack")
 
BooleanOptionKey const vary_cutpoints ("AnchoredDesign:vary_cutpoints")
 
BooleanOptionKey const no_frags ("AnchoredDesign:no_frags")
 
BooleanOptionKey const debug ("AnchoredDesign:debug")
 
BooleanOptionKey const show_extended ("AnchoredDesign:show_extended")
 
BooleanOptionKey const refine_only ("AnchoredDesign:refine_only")
 
BooleanOptionKey const perturb_show ("AnchoredDesign:perturb_show")
 
IntegerOptionKey const perturb_cycles ("AnchoredDesign:perturb_cycles")
 
RealOptionKey const perturb_temp ("AnchoredDesign:perturb_temp")
 
BooleanOptionKey const perturb_CCD_off ("AnchoredDesign:perturb_CCD_off")
 
BooleanOptionKey const perturb_KIC_off ("AnchoredDesign:perturb_KIC_off")
 
BooleanOptionKey const refine_CCD_off ("AnchoredDesign:refine_CCD_off")
 
BooleanOptionKey const refine_KIC_off ("AnchoredDesign:refine_KIC_off")
 
IntegerOptionKey const refine_cycles ("AnchoredDesign:refine_cycles")
 
RealOptionKey const refine_temp ("AnchoredDesign:refine_temp")
 
IntegerOptionKey const refine_repack_cycles ("AnchoredDesign:refine_repack_cycles")
 
BooleanOptionKey const rmsd ("AnchoredDesign:rmsd")
 
BooleanOptionKey const unbound_mode ("AnchoredDesign:unbound_mode")
 
RealOptionKey const chainbreak_weight ("AnchoredDesign:chainbreak_weight")
 

Function Documentation

BooleanOptionKey const AnchoredDesign::allow_anchor_repack ( "AnchoredDesign:allow_anchor_repack"  )
FileOptionKey const AnchoredDesign::anchor ( "AnchoredDesign:anchor"  )
BooleanOptionKey const AnchoredDesign::AnchoredDesign ( "AnchoredDesign"  )
RealOptionKey const AnchoredDesign::chainbreak_weight ( "AnchoredDesign:chainbreak_weight"  )
BooleanOptionKey const AnchoredDesign::debug ( "AnchoredDesign:debug"  )
BooleanOptionKey const AnchoredDesign::no_frags ( "AnchoredDesign:no_frags"  )
BooleanOptionKey const AnchoredDesign::perturb_CCD_off ( "AnchoredDesign:perturb_CCD_off"  )
IntegerOptionKey const AnchoredDesign::perturb_cycles ( "AnchoredDesign:perturb_cycles"  )
BooleanOptionKey const AnchoredDesign::perturb_KIC_off ( "AnchoredDesign:perturb_KIC_off"  )
BooleanOptionKey const AnchoredDesign::perturb_show ( "AnchoredDesign:perturb_show"  )
RealOptionKey const AnchoredDesign::perturb_temp ( "AnchoredDesign:perturb_temp"  )
BooleanOptionKey const AnchoredDesign::refine_CCD_off ( "AnchoredDesign:refine_CCD_off"  )
IntegerOptionKey const AnchoredDesign::refine_cycles ( "AnchoredDesign:refine_cycles"  )
BooleanOptionKey const AnchoredDesign::refine_KIC_off ( "AnchoredDesign:refine_KIC_off"  )
BooleanOptionKey const AnchoredDesign::refine_only ( "AnchoredDesign:refine_only"  )
IntegerOptionKey const AnchoredDesign::refine_repack_cycles ( "AnchoredDesign:refine_repack_cycles"  )
RealOptionKey const AnchoredDesign::refine_temp ( "AnchoredDesign:refine_temp"  )
BooleanOptionKey const AnchoredDesign::rmsd ( "AnchoredDesign:rmsd"  )
BooleanOptionKey const AnchoredDesign::show_extended ( "AnchoredDesign:show_extended"  )
BooleanOptionKey const AnchoredDesign::unbound_mode ( "AnchoredDesign:unbound_mode"  )
BooleanOptionKey const AnchoredDesign::vary_cutpoints ( "AnchoredDesign:vary_cutpoints"  )