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Functions | Variables
drrafter_rna Namespace Reference

Functions

def get_density_per_residue
 
def write_flags_extend_last_round
 
def write_command_file
 
def setup_next_round
 

Variables

tuple parser = argparse.ArgumentParser(description="")
 
tuple args = parser.parse_args()
 
 output_tag = args.outfile_basename,
 
 do_not_recalc_convergence = args.last_round,
 
 skip_clash_check = args.dens_thr,
 
 final_round_2 = args.rosetta_directory)
 

Function Documentation

def drrafter_rna.get_density_per_residue (   model,
  density_map 
)
def drrafter_rna.setup_next_round (   models,
  last_flags,
  output_tag,
  outfile_basename,
  do_not_recalc_convergence = False,
  last_round = False,
  skip_clash_check = False,
  dens_thr = -1.0,
  nstruct = 0,
  chunk_res = [],
  final_round_2 = False,
  map_to_use = '',
  rosetta_dir = '',
  rosetta_ext = '',
  test = False 
)
def drrafter_rna.write_command_file (   command_file_name,
  flags_file,
  rosetta_dir,
  rosetta_ext 
)
def drrafter_rna.write_flags_extend_last_round (   outfile_basename,
  output_tag,
  last_flags,
  last_round,
  nstruct,
  test 
)

References basic::database.open().

Referenced by setup_next_round().

Variable Documentation

tuple drrafter_rna.args = parser.parse_args()
drrafter_rna.do_not_recalc_convergence = args.last_round,
drrafter_rna.final_round_2 = args.rosetta_directory)
drrafter_rna.output_tag = args.outfile_basename,

Referenced by add_rosetta_options_0(), and main().

tuple drrafter_rna.parser = argparse.ArgumentParser(description="")
drrafter_rna.skip_clash_check = args.dens_thr,