Rosetta  2020.37
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cs_rosetta_rna.cc File Reference
#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/VariantType.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/ConstraintSet.fwd.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/rna/chemical_shift/RNA_ChemicalShiftPotential.hh>
#include <core/sequence/util.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/Pose.hh>
#include <core/pose/rna/BasePair.hh>
#include <core/pose/annotated_sequence.hh>
#include <devel/init.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/sequence/Sequence.hh>
#include <core/pose/toolbox/AtomLevelDomainMap.hh>
#include <protocols/rna/denovo/movers/RNA_Minimizer.fwd.hh>
#include <protocols/rna/denovo/movers/RNA_Minimizer.hh>
#include <protocols/rna/denovo/RNA_DeNovoPoseInitializer.hh>
#include <core/import_pose/RNA_DeNovoParameters.hh>
#include <protocols/rna/denovo/RNA_DeNovoProtocol.hh>
#include <protocols/rna/movers/RNA_LoopCloser.hh>
#include <iostream>
#include <string>
#include <basic/database/open.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/excn/Exceptions.hh>
#include <ObjexxFCL/string.functions.hh>
#include <protocols/viewer/viewers.hh>
#include <utility/vector1.hh>

Functions

ScoreFunctionOP create_cs_rosetta_rna_scorefxn ()
 
utility::vector1< BasePair > get_obligated_rna_pairings (RNA_DeNovoParameters const &rna_struct_params)
 
RNA_MinimizerOP setup_rna_minimizer (ScoreFunctionOP scorefxn, RNA_DeNovoParameters const &rna_struct_params, core::pose::Pose &pose)
 
Real compute_chem_shift_RMSD (Pose const &pose)
 
void close_chain_breaks (Pose &pose)
 
void cs_rosetta_rna_pdb (bool perform_minimize)
 
void * my_main (void *)
 
int main (int argc, char *argv[])
 

Function Documentation

void close_chain_breaks ( Pose pose)

Referenced by cs_rosetta_rna_pdb().

Real compute_chem_shift_RMSD ( Pose const &  pose)
ScoreFunctionOP create_cs_rosetta_rna_scorefxn ( )
void cs_rosetta_rna_pdb ( bool  perform_minimize)
utility::vector1< BasePair > get_obligated_rna_pairings ( RNA_DeNovoParameters const &  rna_struct_params)
int main ( int  argc,
char *  argv[] 
)
void* my_main ( void *  )
RNA_MinimizerOP setup_rna_minimizer ( ScoreFunctionOP  scorefxn,
RNA_DeNovoParameters const &  rna_struct_params,
core::pose::Pose pose 
)