test.Workshop3test Namespace Reference

Variables
tuple	ras = pose_from_file("../test/data/workshops/6Q21.clean.pdb")
tuple	scorefxn = create_score_function("ref2015")
tuple	scorefxn2 = ScoreFunction()
tuple	r1 = ras.residue(24)
tuple	r2 = ras.residue(20)
tuple	a1 = r1.atom_index("N")
tuple	a2 = r2.atom_index("O")
tuple	hbond_set = hbonds.HBondSet()
tuple	hset = ras.get_hbonds()
tuple	pose = pose_from_file("../test/data/workshops/1YY9.clean.pdb")
tuple	rsd1_num = pose.pdb_info()
tuple	rsd2_num = pose.pdb_info()
tuple	rsd1 = pose.residue(rsd1_num)
tuple	rsd2 = pose.residue(rsd2_num)
tuple	emap = EMapVector()
tuple	pymol = PyMOLMover()

Variable Documentation

tuple test.Workshop3test.a1 = r1.atom_index("N")

Referenced by numeric::interpolation::periodic_range::full.bilinearly_interpolated(), numeric::interpolation::periodic_range::half.bilinearly_interpolated(), numeric::fourier::SO3coeffs.genWigner_ds(), local::HbondInfo.HbondInfo(), numeric::MathMatrix< float >.inverse_square_matrix(), numeric::linear_algebra.qzit(), numeric::linear_algebra.qzval(), numeric::kinematic_closure.sincos(), and numeric::kinematic_closure::radians.sincos().

tuple test.Workshop3test.a2 = r2.atom_index("O")

Referenced by numeric::interpolation::periodic_range::full.bilinearly_interpolated(), numeric::interpolation::periodic_range::half.bilinearly_interpolated(), numeric::alignment::QCPKernel< Real >.calc_rmsd_Theobald_method(), numeric::geometry::hashing::xyzStripeHash.clash(), numeric::geometry::hashing::xyzStripeHash.clash_amount(), numeric::geometry::hashing::xyzStripeHash.clash_check_ball(), numeric::geometry::hashing::xyzStripeHash.clash_not_resid(), numeric::geometry::hashing::xyzStripeHash.clash_raw(), numeric::geometry::hashing::xyzStripeHash.fill_pairs(), numeric::fourier::SO3coeffs.genWigner_ds(), local::HbondInfo.HbondInfo(), numeric::MathMatrix< float >.inverse_square_matrix(), numeric::geometry::hashing::xyzStripeHash.nbcount(), numeric::geometry::hashing::xyzStripeHashWithMeta< float >.nbcount(), numeric::geometry::hashing::xyzStripeHash.nbcount_raw(), numeric::linear_algebra.qzit(), numeric::linear_algebra.qzval(), numeric::model_quality.rsym_eigenval(), and numeric::statistics.w().

tuple test.Workshop3test.emap = EMapVector()

tuple test.Workshop3test.hbond_set = hbonds.HBondSet()

tuple test.Workshop3test.hset = ras.get_hbonds()

tuple test.Workshop3test.pose = pose_from_file("../test/data/workshops/1YY9.clean.pdb")

tuple test.Workshop3test.pymol = PyMOLMover()

tuple test.Workshop3test.r1 = ras.residue(24)

Referenced by add_rosetta_options_10(), calc_scores(), Solver_NU.calculate_rho(), correct_dunbrack(), getRotID(), and ScoreFragInfo.ScoreFragInfo().

tuple test.Workshop3test.r2 = ras.residue(20)

Referenced by add_rosetta_options_10(), calc_scores(), Solver_NU.calculate_rho(), correct_dunbrack(), getRotID(), and ScoreFragInfo.ScoreFragInfo().

tuple test.Workshop3test.ras = pose_from_file("../test/data/workshops/6Q21.clean.pdb")

Referenced by apps::public1::scenarios::chemically_conjugated_docking.ubq_ras_distance().

tuple test.Workshop3test.rsd1 = pose.residue(rsd1_num)

tuple test.Workshop3test.rsd1_num = pose.pdb_info()

tuple test.Workshop3test.rsd2 = pose.residue(rsd2_num)

tuple test.Workshop3test.rsd2_num = pose.pdb_info()

tuple test.Workshop3test.scorefxn = create_score_function("ref2015")

tuple test.Workshop3test.scorefxn2 = ScoreFunction()