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Rosetta
2020.50
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Variables | |
tuple | ras = pose_from_file("../test/data/workshops/6Q21.clean.pdb") |
tuple | scorefxn = create_score_function("ref2015") |
tuple | scorefxn2 = ScoreFunction() |
tuple | r1 = ras.residue(24) |
tuple | r2 = ras.residue(20) |
tuple | a1 = r1.atom_index("N") |
tuple | a2 = r2.atom_index("O") |
tuple | hbond_set = hbonds.HBondSet() |
tuple | hset = ras.get_hbonds() |
tuple | pose = pose_from_file("../test/data/workshops/1YY9.clean.pdb") |
tuple | rsd1_num = pose.pdb_info() |
tuple | rsd2_num = pose.pdb_info() |
tuple | rsd1 = pose.residue(rsd1_num) |
tuple | rsd2 = pose.residue(rsd2_num) |
tuple | emap = EMapVector() |
tuple | pymol = PyMOLMover() |
tuple test.Workshop3test.a1 = r1.atom_index("N") |
Referenced by numeric::interpolation::periodic_range::full.bilinearly_interpolated(), numeric::interpolation::periodic_range::half.bilinearly_interpolated(), numeric::fourier::SO3coeffs.genWigner_ds(), local::HbondInfo.HbondInfo(), numeric::MathMatrix< float >.inverse_square_matrix(), numeric::linear_algebra.qzit(), numeric::linear_algebra.qzval(), numeric::kinematic_closure.sincos(), and numeric::kinematic_closure::radians.sincos().
tuple test.Workshop3test.a2 = r2.atom_index("O") |
Referenced by numeric::interpolation::periodic_range::full.bilinearly_interpolated(), numeric::interpolation::periodic_range::half.bilinearly_interpolated(), numeric::alignment::QCPKernel< Real >.calc_rmsd_Theobald_method(), numeric::geometry::hashing::xyzStripeHash.clash(), numeric::geometry::hashing::xyzStripeHash.clash_amount(), numeric::geometry::hashing::xyzStripeHash.clash_check_ball(), numeric::geometry::hashing::xyzStripeHash.clash_not_resid(), numeric::geometry::hashing::xyzStripeHash.clash_raw(), numeric::geometry::hashing::xyzStripeHash.fill_pairs(), numeric::fourier::SO3coeffs.genWigner_ds(), local::HbondInfo.HbondInfo(), numeric::MathMatrix< float >.inverse_square_matrix(), numeric::geometry::hashing::xyzStripeHash.nbcount(), numeric::geometry::hashing::xyzStripeHashWithMeta< float >.nbcount(), numeric::geometry::hashing::xyzStripeHash.nbcount_raw(), numeric::linear_algebra.qzit(), numeric::linear_algebra.qzval(), numeric::model_quality.rsym_eigenval(), and numeric::statistics.w().
tuple test.Workshop3test.emap = EMapVector() |
tuple test.Workshop3test.hbond_set = hbonds.HBondSet() |
tuple test.Workshop3test.hset = ras.get_hbonds() |
tuple test.Workshop3test.pose = pose_from_file("../test/data/workshops/1YY9.clean.pdb") |
tuple test.Workshop3test.pymol = PyMOLMover() |
tuple test.Workshop3test.r1 = ras.residue(24) |
tuple test.Workshop3test.r2 = ras.residue(20) |
tuple test.Workshop3test.ras = pose_from_file("../test/data/workshops/6Q21.clean.pdb") |
tuple test.Workshop3test.rsd1 = pose.residue(rsd1_num) |
tuple test.Workshop3test.rsd1_num = pose.pdb_info() |
tuple test.Workshop3test.rsd2 = pose.residue(rsd2_num) |
tuple test.Workshop3test.rsd2_num = pose.pdb_info() |
tuple test.Workshop3test.scorefxn = create_score_function("ref2015") |
tuple test.Workshop3test.scorefxn2 = ScoreFunction() |