Rosetta  2019.35
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Variables
basic::options::OptionKeys::match Namespace Reference

Variables

BooleanOptionKey const match
 
StringOptionKey const lig_name
 
RealOptionKey const bump_tolerance
 
FileOptionKey const active_site_definition_by_residue
 
FileOptionKey const active_site_definition_by_gridlig
 
FileOptionKey const required_active_site_atom_names
 
FileOptionKey const grid_boundary
 
FileOptionKey const geometric_constraint_file
 
FileOptionKey const scaffold_active_site_residues
 
FileOptionKey const scaffold_active_site_residues_for_geomcsts
 
RealOptionKey const euclid_bin_size
 
RealOptionKey const euler_bin_size
 
BooleanOptionKey const consolidate_matches
 
IntegerOptionKey const output_matches_per_group
 
StringVectorOptionKey const orientation_atoms
 
StringOptionKey const output_format
 
StringOptionKey const match_grouper
 
RealOptionKey const grouper_downstream_rmsd
 
BooleanOptionKey const output_matchres_only
 
IntegerVectorOptionKey const geom_csts_downstream_output
 
BooleanOptionKey const filter_colliding_upstream_residues
 
RealOptionKey const upstream_residue_collision_tolerance
 
RealOptionKey const upstream_residue_collision_score_cutoff
 
RealOptionKey const upstream_residue_collision_Wfa_atr
 
RealOptionKey const upstream_residue_collision_Wfa_rep
 
RealOptionKey const upstream_residue_collision_Wfa_sol
 
BooleanOptionKey const filter_upstream_downstream_collisions
 
RealOptionKey const updown_collision_tolerance
 
RealOptionKey const updown_residue_collision_score_cutoff
 
RealOptionKey const updown_residue_collision_Wfa_atr
 
RealOptionKey const updown_residue_collision_Wfa_rep
 
RealOptionKey const updown_residue_collision_Wfa_sol
 
BooleanOptionKey const define_match_by_single_downstream_positioning
 
IntegerOptionKey const ligand_rotamer_index
 
BooleanOptionKey const enumerate_ligand_rotamers
 
BooleanOptionKey const only_enumerate_non_match_redundant_ligand_rotamers
 
BooleanOptionKey const dynamic_grid_refinement
 
BooleanOptionKey const build_round1_hits_twice
 

Variable Documentation

FileOptionKey const basic::options::OptionKeys::match::active_site_definition_by_gridlig

Referenced by add_rosetta_options_9().

FileOptionKey const basic::options::OptionKeys::match::active_site_definition_by_residue

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::build_round1_hits_twice

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::bump_tolerance

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::consolidate_matches

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::define_match_by_single_downstream_positioning

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::dynamic_grid_refinement

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::enumerate_ligand_rotamers

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::euclid_bin_size

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::euler_bin_size

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::filter_colliding_upstream_residues

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::filter_upstream_downstream_collisions

Referenced by add_rosetta_options_9().

IntegerVectorOptionKey const basic::options::OptionKeys::match::geom_csts_downstream_output

Referenced by add_rosetta_options_9().

FileOptionKey const basic::options::OptionKeys::match::geometric_constraint_file
FileOptionKey const basic::options::OptionKeys::match::grid_boundary

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::grouper_downstream_rmsd

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::match::lig_name
IntegerOptionKey const basic::options::OptionKeys::match::ligand_rotamer_index
BooleanOptionKey const basic::options::OptionKeys::match::match
StringOptionKey const basic::options::OptionKeys::match::match_grouper

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::only_enumerate_non_match_redundant_ligand_rotamers

Referenced by add_rosetta_options_9().

StringVectorOptionKey const basic::options::OptionKeys::match::orientation_atoms

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::match::output_format

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::match::output_matches_per_group

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::output_matchres_only

Referenced by add_rosetta_options_9().

FileOptionKey const basic::options::OptionKeys::match::required_active_site_atom_names

Referenced by add_rosetta_options_9().

FileOptionKey const basic::options::OptionKeys::match::scaffold_active_site_residues

Referenced by add_rosetta_options_9().

FileOptionKey const basic::options::OptionKeys::match::scaffold_active_site_residues_for_geomcsts

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::updown_collision_tolerance

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_score_cutoff

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_Wfa_atr

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_Wfa_rep

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_Wfa_sol

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_score_cutoff

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_tolerance

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_Wfa_atr

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_Wfa_rep

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_Wfa_sol

Referenced by add_rosetta_options_9().