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exposed_strand_finder.cc File Reference

finds exposed strands with option to check rmsd to another strand More...

#include <devel/init.hh>
#include <utility/exit.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/vector1.functions.hh>
#include <utility/vector1.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/pose/metrics/CalculatorFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/rms_util.tmpl.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/hbonds/hbonds.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/methods/EnergyMethod.hh>
#include <core/scoring/EnergyMap.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/etable/EtableEnergy.hh>
#include <core/scoring/etable/Etable.hh>
#include <core/scoring/TenANeighborGraph.hh>
#include <core/conformation/Residue.hh>
#include <core/id/AtomID_Map.hh>
#include <numeric/xyzVector.hh>
#include <basic/MetricValue.hh>
#include <basic/Tracer.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/StructureRestrictor.hh>
#include <core/pose/metrics/simple_calculators/SasaCalculatorLegacy.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <sstream>
#include <iostream>
#include <string>
#include <cmath>
#include <utility>
#include <core/pose/util.tmpl.hh>
#include <utility/vector0.hh>

Classes

class  ExposedStrandMover
 

Enumerations

enum  Index {
  chain_index = 1, start_index = 2, end_index = 3, max_neighbors = 16,
  trans = 1, rot = 2
}
 

Functions

int main (int argc, char *argv[])
 

Variables

static basic::Tracer TR ("apps.public.beta_strand_homodimer_design.exposed_strand_finder")
 
static basic::Tracer TRout ("ExposedStrand")
 
basic::options::BooleanOptionKey
const 
check_rmsd ("check_rmsd")
 
basic::options::StringVectorOptionKey
const 
strand_span ("strand_span")
 
basic::options::IntegerOptionKey
const 
beta_length ("beta_length")
 
basic::options::IntegerOptionKey
const 
sat_allow ("sat_allow")
 
basic::options::RealOptionKey const max_E_allow ("max_E_allow")
 
basic::options::RealOptionKey const max_RMSD ("max_RMSD")
 
basic::options::StringOptionKey
const 
struct_file ("struct_file")
 

Detailed Description

finds exposed strands with option to check rmsd to another strand

Enumeration Type Documentation

enum Index
Enumerator
chain_index 
start_index 
end_index 
max_neighbors 
trans 
rot 

Function Documentation

int main ( int  argc,
char *  argv[] 
)

Variable Documentation

basic::options::IntegerOptionKey const beta_length("beta_length")
basic::options::BooleanOptionKey const check_rmsd("check_rmsd")
basic::options::RealOptionKey const max_E_allow("max_E_allow")

Referenced by ExposedStrandMover::apply(), and main().

basic::options::RealOptionKey const max_RMSD("max_RMSD")

Referenced by ExposedStrandMover::apply(), and main().

basic::options::IntegerOptionKey const sat_allow("sat_allow")
basic::options::StringVectorOptionKey const strand_span("strand_span")

Referenced by ExposedStrandMover::apply(), and main().

basic::options::StringOptionKey const struct_file("struct_file")

Referenced by ExposedStrandMover::apply(), and main().

basic::Tracer TR("apps.public.beta_strand_homodimer_design.exposed_strand_finder")
static
basic::Tracer TRout("ExposedStrand")
static