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Variables
test.T200_Scoring Namespace Reference

Variables

tuple pose = core.import_pose.pose_from_file("../test/data/test_fragments.pdb")
 
tuple scorefxn = create_score_function('ref2015')
 
tuple weights = pose.energies()
 
tuple rsd1 = pose.residue(4)
 
tuple rsd2 = pose.residue(5)
 
tuple emap = core.scoring.EMapVector()
 
list score_types = []
 
tuple ii = rosetta.core.scoring.ScoreType(i)
 
tuple hbond_set = rosetta.core.scoring.hbonds.HBondSet()
 

Variable Documentation

tuple test.T200_Scoring.emap = core.scoring.EMapVector()
tuple test.T200_Scoring.hbond_set = rosetta.core.scoring.hbonds.HBondSet()
tuple test.T200_Scoring.ii = rosetta.core.scoring.ScoreType(i)

Referenced by utility::options::OptionCollection.add_edits(), align_pdbs(), numeric::coordinate_fitting::FlatLookup< Real *, numeric::Size, Real >.all_matches_below_threshold(), all_pair_energies(), utility::graph::Graph.all_pairs_shortest_paths(), all_pose_residues(), utility::graph.all_visited(), analyze_poses_for_convergence(), ExposedStrandMover.apply(), HDmakerMover.apply(), HDdesignMover.apply(), RNA_ScoreMover.apply(), utility.arg_greatest_several(), utility.arg_least_several(), utility.arg_max(), utility.arg_min(), supercharge.AvNAPSA_values(), HDmakerMover.bb_score(), ExposedStrandMover.bb_score(), HBondReporter.bfactor(), numeric::geometry::hashing::SixDCoordinateBinner.bin_center_point(), numeric::geometry::hashing::SixDCoordinateBinner.bin_from_index(), HDdesignMover.calc_bb_E(), calc_dihedral_rms(), calc_rama_scores(), calc_scores(), HPatchByChainNPDCalculator.calculate(), NBuriedUnsatsCalcultor.calculate(), calculate_pairwise_RMSD(), calpha_pdb_superimpose_pose(), check_for_contacts(), utility::recent_history_queue.clear(), utility::in_place_list< T >.clear(), composite_sequences_from_cmd_line(), utility::FixedSizeLexicographicalIterator< S >.continue_at_dimension(), utility::LexicographicalIterator.continue_at_dimension(), convert(), utility::graph::ArrayPoolElement< T >.copy_array_contents(), utility::graph::UpperEdgeGraph< V, E >.copy_from(), correct_dunbrack(), utility::graph::ArrayPool< T >.create_new_block(), create_pseudo_commandline(), utility::graph::UpperEdgeGraph< V, E >.create_vertices(), utility::graph::Graph.delete_everything(), utility::graph::Digraph.delete_everything(), destroy_pseudo_commandline(), determine_residues_to_rebuild(), numeric::interpolation::spline::PolycubicSpline< N >.dFdxi(), utility::graph::Digraph.Digraph(), numeric::interpolation::InterpolatedPotential< N >.dimension(), utility::graph::DisjointSets.disjoint_set_sizes(), utility::graph::DisjointSets.DisjointSets(), do_erraser2(), utility::graph::UpperEdgeGraph< V, E >.drop_all_edges(), utility::graph::UEVertex< V, E >.edge_exists(), supercharge.energy_comparison(), erraser2_test(), numeric::interpolation::spline::PolycubicSpline< N >.F(), utility.file_contents(), fill_designable_set(), fill_num_neighbors(), utility::graph.find_connected_components(), utility::graph.find_unmarked_node(), utility::fixedsizearray0< T, S >.fixedsizearray0(), utility::fixedsizearray1< Size, N >.fixedsizearray1(), utility::FixedSizeLexicographicalIterator< S >.FixedSizeLexicographicalIterator(), gen_pep_bb_sequential(), numeric::AxisRotationSampler.get(), numeric::UniformRotationSampler.get(), utility::graph::UEVertex< V, E >.get_edge(), numeric::interpolation::InterpolatedPotential< N >.get_indices(), get_n_pep_nbrs(), utility::graph::LowMemGraph< _Node, _Edge >.getTotalMemoryUsage(), utility::graph::Graph.getTotalMemoryUsage(), utility::graph::Digraph.getTotalMemoryUsage(), graft_in_positions(), utility::graph::Graph.Graph(), numeric::geometry::hashing::SixDCoordinateBinner.halfbin6(), harvest_scores(), numeric::fourier::SHT.idx_to_euler(), numeric::fourier::SHT.idx_to_rot(), numeric::expression_parser::ASTPrinter.indent_line(), utility::tag.indent_w_spaces(), utility::FixedSizeLexicographicalIterator< S >.index(), utility::LexicographicalIterator.index(), utility::heap.index_for_val(), utility.insert_middle(), interface_rmsd(), utility::LexicographicalIterator.LexicographicalIterator(), utility::tag::XMLErrorHandler.lines_near_error(), main(), utility::graph::UEVertex< V, E >.make_edge_vector_current(), numeric::MathNTensor< double, 2 >.MathNTensor(), numeric::MathTensor< double >.MathTensor(), numeric.max(), utility.max(), measure_sequence_recovery(), numeric.min(), utility.min(), minimize_test(), numeric::linear_algebra.minimum_bounding_ellipse(), ExposedStrandMover.move_superimpose(), utility::graph::DisjointSets.n_disjoint_sets(), utility.nmers_worker(), numeric::linear_algebra.non_square_transpose(), utility::FixedSizeLexicographicalIterator< S >.num_states_total(), utility::LexicographicalIterator.num_states_total(), obtain_start_pose(), numeric::interpolation::InterpolatedPotential< N >.operator()(), ObjexxFCL::FArray2< T >.operator*=(), utility::FixedSizeLexicographicalIterator< S >.operator++(), utility::LexicographicalIterator.operator++(), numeric::MathNTensor< double, 2 >.operator/=(), utility::fixedsizearray0< T, S >.operator=(), utility::fixedsizearray1< Size, N >.operator=(), utility::graph::Graph.operator=(), utility::graph::Digraph.operator=(), numeric::interpolation::spline::CompoundInterpolator.operator==(), numeric::MathVector< double >.operator==(), utility::fixedsizearray1< Size, N >.operator==(), output_seq_with_residue_emphasis(), ScoreFragmentSetMover.overlap_score(), numeric::expression_parser::ArithmeticASTFunction.parse(), pdb_to_silent_file(), numeric::interpolation.polycubic_interpolation(), utility::SimulateMPIData.pop_next_message_for_node_of_type(), utility::libsvm::Svm_rosetta.predict(), utility::libsvm::Svm_rosetta.predict_probability(), PhProtocol.prepack_pose(), Prepare(), utility::tag.print_node_stack(), numeric::kdtree.print_tree(), utility::graph::LowMemGraph< _Node, _Edge >.print_vertices(), utility::graph::Graph.print_vertices(), utility::graph::Digraph.print_vertices(), utility.quoted_split(), numeric::linear_algebra.qzvec(), numeric::random.random_permutation(), numeric::kdtree::KDPoint.read_data(), read_native_sequence_for_entity_elements(), utility::recent_history_queue.recent_history_queue(), InteractionGraphPerformanceBenchmark.redesign_20(), numeric::MathTensor< double >.replace_layer(), numeric::MathNTensor< double, 2 >.replace_layer(), utility::in_place_list< T >.resize(), ObjexxFCL::FArray2< T >.right_multiply_by_transpose(), rna_design_test(), FastRelaxPerformanceBenchmark.run(), InteractionGraphPerformanceBenchmark.run(), ScoreEachBenchmark.run_long_ranged_two_body_energy(), ScoreEachBenchmark.run_one_body_energy(), run_pep_prep(), ScoreEachBenchmark.run_short_ranged_two_body_energy(), RunPepSpec(), save_per_residue_scores(), numeric::expression_parser::ArithmeticScanner.scan_identifier(), numeric::expression_parser::ArithmeticScanner.scan_literal(), utility::FixedSizeLexicographicalIterator< S >.set_dimension_sizes(), utility::LexicographicalIterator.set_dimension_sizes(), utility::graph::LowMemGraph< _Node, _Edge >.set_num_nodes(), utility::graph::Graph.set_num_nodes(), utility::graph::Digraph.set_num_nodes(), utility::FixedSizeLexicographicalIterator< S >.set_position_from_index(), utility::LexicographicalIterator.set_position_from_index(), supercharge.set_surface(), HPatchByChainNPDCalculator.setup(), InteractionGraphPerformanceBenchmark.setup_for_denseig(), show_accuracy_report(), utility::SimulateMPIData.SimulateMPIData(), numeric::geometry::hashing::SixDCoordinateBinner.SixDCoordinateBinner(), slice_ellipsoid_envelope(), slice_sample_res_and_surrounding(), numeric::linear_algebra.sum_of_square_differences(), HDdesignMover.sym_repack_minimize(), PhProtocol.titrate_pH(), numeric::interpolation::spline::PolycubicSpline< N >.train(), and validate_dunbrack_binaries().

tuple test.T200_Scoring.pose = core.import_pose.pose_from_file("../test/data/test_fragments.pdb")
tuple test.T200_Scoring.rsd1 = pose.residue(4)
tuple test.T200_Scoring.rsd2 = pose.residue(5)
list test.T200_Scoring.score_types = []

Referenced by calc_rama_scores().

tuple test.T200_Scoring.scorefxn = create_score_function('ref2015')
tuple test.T200_Scoring.weights = pose.energies()