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Variables
test.T150_PyMOL_Integration Namespace Reference

Variables

tuple pose = pyrosetta.pose_from_sequence('EVAAAVAT')
 
tuple pymol = pyrosetta.PyMOLMover()
 
tuple scorefxn = pyrosetta.get_fa_scorefxn()
 
tuple colors = rosetta.std.map_int_int()
 
tuple mm = pyrosetta.MoveMap()
 
tuple observer = rosetta.protocols.moves.AddPyMOLObserver(pose)
 
float psi = 0.0
 
float phi = 0.0
 
int i = 1
 

Variable Documentation

tuple test.T150_PyMOL_Integration.colors = rosetta.std.map_int_int()
int test.T150_PyMOL_Integration.i = 1

Referenced by numeric.access_Real_MathNTensor(), add_deviations(), utility::json_spirit.add_esc_chars(), apps::public1::scenarios::chemically_conjugated_docking.add_extra_bodies(), basic::database::schema_generator::Schema.add_foreign_key(), utility::keys::SmallKeyMap< K, T >.add_key(), utility::keys::ClassKeyMap< K, T, C >.add_key(), utility::keys::SmallKeyVector< PathVectorOptionKey, PathVectorOption >.add_key(), utility::keys::ClassKeyVector< K, T, C >.add_key(), numeric::interpolation::spline::CompoundInterpolator.add_range(), binder.add_relevant_include_for_decl(), binder::ClassBinder.add_relevant_includes(), binder.add_relevant_includes(), align_helix(), already_minimized(), ObjexxFCL::ChunkVector< typename >.append(), Minimize.apply(), IdentifyCDRClusters.apply(), zinc1_homodimer_setup.apply(), LigandRepackMinimizeProtocol.apply(), MetalSiteFinderMover.apply(), AnchorFinderMover.apply(), NCMinimize.apply(), APDBCMover.apply(), ExemplarMover.apply(), BacksideHbondFinderMover.apply(), HbsDesignMover.apply(), PeptoidDesignMover.apply(), OopDesignMover.apply(), CaToAllAtom.apply(), MPDomainAssembly.apply(), GlycanClashCheckMover.apply(), supercharge.apply(), DougsDockDesignMinimizeMagicMover.apply(), HBondReporter.apply(), UBQ_GTPase_disulfide_Mover.apply(), UBQ_E2Mover.apply(), numeric::geometry.are_coplanar(), ObjexxFCL::Chunk< T >.assign(), utility::keys::ClassKeyMap< K, T, C >.assign(), utility::keys::SmallKeyMap< K, T >.assign(), ObjexxFCL::CArray< typename >.assign(), ObjexxFCL::format::Bite< T >.assign(), ObjexxFCL::ChunkVector< typename >.assign(), ObjexxFCL::CArrayP< typename >.assign(), IAMover.assign_IA_mover(), average(), average_score_components(), supercharge.AvNAPSA_values(), utility::io.base64_decode(), utility::io.base64_encode(), base_name(), numeric::interpolation::periodic_range::half.bin(), numeric::interpolation::periodic_range::full.bin(), numeric::MultiDimensionalHistogram.bin_index(), binder.bind_constructor(), binder.bind_function(), basic::database::insert_statement_generator::InsertGenerator.bind_row_data(), binder::ClassBinder.bind_with(), utility::BitVector< B >.BitVector(), utility::graph.breadth_first_search_prune(), numeric::kinematic_closure::radians.bridge_objects(), numeric::kinematic_closure.bridgeObjects(), numeric::kinematic_closure.bridgeObjects_nonredundant(), numeric::kinematic_closure.build_dixon_matrices(), numeric::kinematic_closure.build_sin_and_cos(), numeric::kinematic_closure.buildsturm(), caculate_order_scores(), calc_rama_scores(), numeric::model_quality.calc_rms(), numeric::alignment::QCPKernel< Real >.calc_rmsd_Theobald_method(), calc_rmsf_and_avrg(), calculate_average_residue_scores(), calculate_binding_energy(), calculate_burial(), calculate_res_map(), Solver.calculate_rho(), Solver_NU.calculate_rho(), basic::TracerImpl.calculate_tracer_level(), calculate_variations(), ObjexxFCL::CArray< typename >.CArray(), ObjexxFCL::CArrayP< typename >.CArrayP(), CAtrace.CAtrace(), numeric.ccd_angle(), numeric::kinematic_closure.chainTORS(), numeric::kinematic_closure::radians.chainTORS(), numeric::kinematic_closure.chainXYZ(), numeric::kinematic_closure::radians.chainXYZ(), check_all_poses_have_the_same_sequence(), check_redundant(), check_required_options(), utility::options::OptionCollection.check_specs(), basic::database.check_statement_sanity(), utility::options::OptionCollection.check_values(), ObjexxFCL::Chunk< T >.Chunk(), ObjexxFCL::ChunkVector< typename >.ChunkVector(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >.cl_value(), numeric::geometry::hashing::xyzStripeHash.clash(), numeric::geometry::hashing::xyzStripeHash.clash_amount(), numeric::geometry::hashing::xyzStripeHash.clash_check_ball(), numeric::geometry::hashing::xyzStripeHash.clash_check_residue_pairs(), numeric::geometry::hashing::xyzStripeHash.clash_not_resid(), numeric::geometry::hashing::xyzStripeHash.clash_raw(), ScoreFragmentSetMover.clash_score(), utility::keys::ClassKeyMap< K, T, C >.ClassKeyMap(), utility::options::OptionCollection.cleaned(), numeric::VoxelGrid< typename >.Clear(), numeric::coordinate_fitting::FlatLookup< Real *, numeric::Size, Real >.closest_match(), numeric::coordinate_fitting::FlatLookup< Real *, numeric::Size, Real >.closest_match_subset(), numeric::AgglomerativeHierarchicalClusterer.cluster(), numeric::MultiDimensionalHistogram.collapse(), numeric::model_quality.COMAS(), apps::pilot::frankdt.compare_segment_to_motif(), ObjexxFCL::Cstring.compress(), ObjexxFCL::Fstring.compress(), compute_folding_energies(), utility::signals::SignalHub< ReturnType, Signal >.connect(), numeric.const_access_Real_MathNTensor(), ObjexxFCL::IndexRange.contain(), utility::json_spirit::Generator< Value_type, Ostream_type >.contains_composite_elements(), numeric::alignment.coordinate_array_broadcast_rmsd(), numeric::alignment.coordinate_array_rmsd(), numeric::alignment.coordinate_array_superimpose(), numeric::coordinate_fitting::CoordinateArray_RMSD_FlatLookup< Real >.CoordinateArray_RMSD_FlatLookup(), copy_asymm_unit_to_other_subunits(), core_init_with_additional_options(), correct_dunbrack(), correct_rama(), correlation_coefficient(), count_analytically_cyclic(), count_analytically_improper_rotational(), count_numerically(), count_semi_analytically_improper_rotational(), create_bp_jump_database_test(), utility::file.create_temp_filename(), numeric.cumulative(), DockFragmentsMover.cut_from_map(), numeric::geometry::hashing::xyzStripeHash.debug_pdb(), utility.decode6bit(), delete_protein_from_pose(), delete_RNA_from_pose(), utility::DenseBoolMap< NUM_ELEMS, BASE_INDEX >.DenseBoolMap(), densityTools(), supercharge.design_supercharge(), zinc1_homodimer_design.design_symmetric_homodimer_interface(), zinc2_homodimer_design.design_symmetric_homodimer_metal_interface(), numeric::interpolation::spline::CubicSpline.dF(), numeric::interpolation::spline::TricubicSpline.dFdx(), numeric::interpolation::spline::BicubicSpline.dFdx(), numeric::interpolation::spline::PolycubicSpline< N >.dFdxi(), numeric::interpolation::spline::TricubicSpline.dFdy(), numeric::interpolation::spline::BicubicSpline.dFdy(), numeric::interpolation::spline::TricubicSpline.dFdz(), numeric::MultiDimensionalHistogram.dim_labels(), utility::signals::SignalHub< ReturnType, Signal >.disconnect(), ObjexxFCL.distance(), ObjexxFCL.distance_squared(), numeric::kinematic_closure.dixon_eig(), numeric::kinematic_closure.dixon_sturm(), numeric::kinematic_closure.dixonResultant(), do_color_by_score(), do_cyclic_permutation(), basic::YamlEmitter.do_indent(), basic::JsonEmitter.do_indent(), basic::thread_manager::RosettaThreadManager.do_multistage_work_vector_in_threads(), Solver.do_shrinking(), Solver_NU.do_shrinking(), do_terminal_opt(), basic::thread_manager::RosettaThreadManager.do_work_vector_in_threads(), ObjexxFCL.dot(), ObjexxFCL.dot_product(), drrafter_error_estimation(), dump_table(), numeric.eigenvalue_jacobi(), numeric.eigenvector_jacobi(), utility.encode6bit(), basic::Emitter.end(), numeric::MultiDimensionalHistogram.end(), energy_cluster(), supercharge.energy_comparison(), ObjexxFCL.equali(), numeric::Polynomial_1d.eval(), numeric.expand_xforms(), numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >.extract_eigenvalues(), numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >.extract_eigenvectors(), numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >.extract_real_indices(), numeric::interpolation::spline::CubicSpline.F(), numeric::interpolation::spline::TricubicSpline.F(), numeric::interpolation::spline::BicubicSpline.F(), ObjexxFCL::FArray< T >.FArray(), ObjexxFCL::FArray1D< double >.FArray1D(), numeric::interpolation::spline::BicubicSpline.FdF(), numeric::fourier.fft(), numeric::fourier.fft2(), numeric::fourier.fft3(), figure_out_fold_tree(), utility::file.file_delete(), numeric::geometry::hashing::xyzStripeHash.fill_pairs(), PhProtocol.finalize_res_list(), ObjexxFCL::Cstring.find(), ObjexxFCL::Fstring.find(), utility::signals::SignalHub< ReturnType, Signal >.find_connection(), ObjexxFCL::Fstring.find_first_not_of(), ObjexxFCL::Fstring.find_first_of(), utility::options::OptionCollection.find_key_cl(), ObjexxFCL::Cstring.find_last(), ObjexxFCL::Fstring.find_last(), ObjexxFCL::Fstring.find_last_non_whitespace(), ObjexxFCL::Fstring.find_last_not_of(), ObjexxFCL::Fstring.find_last_of(), ObjexxFCL::Fstring.find_last_whitespace(), find_min_permutation(), find_neighbors(), find_neighbors_directional(), ObjexxFCL::Fstring.find_non_whitespace(), find_residues_around_mutation(), utility::json_spirit.find_value(), ObjexxFCL::Fstring.find_whitespace(), numeric::model_quality.findUU(), numeric::coordinate_fitting::FlatLookup< Real *, numeric::Size, Real >.first_match(), fit_helix_in_map(), binder.fix_boolean_types(), numeric::VoxelArray< _Float, _Value >.floats_to_index(), basic::TracerImpl.flush_all_channels(), B.foo_member(), B.foo_member_const(), B.foo_static(), numeric::fourier::SHT.forwardS2(), utility.fractional_rank(), numeric::kinematic_closure.frame(), numeric::kinematic_closure::radians.frame(), full_length_rmsd_over_reside_list_general(), basic::database.full_name(), binder.function_arguments(), binder.function_arguments_for_lambda(), binder.function_arguments_for_py_overload(), utility::factory::Factory< typename >.fxn_registry_transfer(), ObjexxFCL::format.G(), utility::keys::KeyLookup< K >.gen(), gen_pep_bb_sequential(), numeric::random::mt19937_RG.gen_rand_all(), binder::Context.generate(), binder.generate_documentation_string_for_declaration(), utility::xsd_util.generate_human_readable_recursive(), binder.generate_include_directives(), utility::xsd_util.generate_tag_given_options(), numeric::UniformRotationSampler.generateIcosahedralSamples(), numeric::fourier::SO3coeffs.genWigner_ds(), get_aligned_crd(), numeric::interpolation::spline::PolycubicSpline< N >.get_all_derivs(), get_avrgcrd(), get_avrgpose(), get_bps_seq(), get_close_and_lowE(), numeric.get_cluster_data(), numeric::MathMatrix< float >.get_col(), get_exclid(), numeric::interpolation::spline::SplineGenerator.get_interpolator(), get_logL_DMS(), numeric::MathNTensor< double, 2 >.get_mathmatrix(), get_median_structure(), get_min_index(), get_mutations_from_file(), get_n_mer_maltose(), get_n_mer_polyalanine(), get_n_pep_nbrs(), supercharge.get_net_charge(), get_obligated_rna_pairings(), get_phi_psi_mm(), numeric::interpolation::spline.get_PolycubicSpline_F(), numeric::interpolation::spline.get_PolycubicSpline_gradient(), basic.get_pymol_chain_index_1(), SVC_Q.get_Q(), ONE_CLASS_Q.get_Q(), SVR_Q.get_Q(), get_simple_RNA_protein_fold_tree(), get_sphere_xyz(), binder.get_text(), binder.get_type_dependencies(), get_unbound_protein_score(), utility::json_spirit.get_value(), utility::tag::Tag.getOption(), PerformanceBenchmark.getReport(), utility::tag::Tag.getTags(), binder::Context.global_insertion_operator(), go_main(), graft_in_positions(), zinc2_homodimer_setup.gridsearch_symmetric_alignments(), harvest_scores(), ObjexxFCL::Fstring.has(), ObjexxFCL::Cstring.has(), ObjexxFCL::Cstring.has_any_of(), ObjexxFCL::Fstring.has_any_of(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >.has_any_of_characters(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >.has_any_of_characters(), utility::json_spirit.has_value(), utility::tag::Tag.hasOption(), helix_from_sequence(), numeric.hsv_to_rgb(), numeric::fourier.ifft(), numeric::fourier.ifft2(), numeric::fourier.ifft3(), numeric::fourier.ifft3_dynamic(), basic::TracerImpl.in(), binder::Config.includes_code(), utility::json_spirit::Generator< Value_type, Ostream_type >.indent(), numeric::alignment.indexed_coordinate_array_broadcast_rmsd(), numeric::VoxelArray< _Float, _Value >.indices_to_center(), numeric::geometry::hashing::MinimalClashHash.init(), numeric::geometry::hashing::SixDOffsetTree.init(), numeric::geometry::hashing::xyzStripeHash.init(), numeric::geometry::hashing::xyzStripeHashWithMeta< float >.init(), fmt::internal::ArgMap< Char >.init(), numeric::random::mt19937_RG.init_by_array(), UBQ_GTPase_disulfide_Mover.init_on_new_input(), UBQ_E2Mover.init_on_new_input(), numeric::random::mt19937_RG.initial_mask(), numeric::alignment::QCPKernel< Real >.inner_product(), utility::keys::ClassKeyMap< K, T, C >.insert(), utility::keys::SmallKeyMap< K, T >.insert(), basic::database.insert_or_ignore(), numeric::VoxelGrid< typename >.InsertObjects(), interface_rmsd(), numeric::interpolation::spline::CompoundInterpolator.interpolate(), invariants_for_cyclic_permutation(), numeric::MathMatrix< float >.inverse_diagonal_matrix(), numeric::MathMatrix< float >.inverse_square_matrix(), numeric::MathMatrix< float >.inverse_tridiagonal_matrix(), numeric::fourier::SHT.inverseS2(), numeric::fourier::SHT.inverseSo3(), utility::vectorL< L, bool, A >.invert(), numeric::fourier::SO3coeffs.InvLegendre(), ObjexxFCL.is_any_of(), ObjexxFCL::FArray< T >.is_default(), is_deletable(), numeric::MathMatrix< float >.is_diagonal(), utility::json_spirit.is_eq(), Solver.is_free(), ObjexxFCL::FArray2< T >.is_identity(), binder::Config.is_include_skipping_requested(), numeric::IntervalSet< double >.is_inside(), Solver.is_lower_bound(), utility::options::OptionCollection.is_relevant(), binder.is_std_function_bindable(), numeric::MathMatrix< float >.is_tri_diagonal(), ObjexxFCL::FArray< T >.is_uniform(), Solver.is_upper_bound(), numeric::MathNTensor< double, 2 >.is_valid_position(), ObjexxFCL::FArray< T >.is_zero(), zinc_stats::ZincStatisticGenerator.iterate_over_residues(), Kernel.Kernel(), Kernel.kernel_precomputed(), utility::keys::KeyLookup< K >.key(), ObjexxFCL::KeyFArray1D< typename >.KeyFArray1D(), numeric::fourier::kiss_fft_state.kiss_fft_state(), numeric::fourier.kiss_fft_stride(), numeric::fourier.kiss_fftnd(), ObjexxFCL::Cstring.left_justify(), ObjexxFCL::Fstring.left_justify(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >.legal_string(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >.legal_string(), numeric::fourier::SO3coeffs.Legendre(), ObjexxFCL::Cstring.len_trim(), ObjexxFCL::Fstring.len_trim(), ObjexxFCL::Cstring.len_trim_whitespace(), ObjexxFCL::Fstring.len_trim_whitespace(), numeric::IntervalSet< double >.length(), ObjexxFCL::FArray1< T >.length(), ObjexxFCL::CArray< typename >.length(), ObjexxFCL::CArrayP< typename >.length(), ObjexxFCL::ChunkVector< typename >.length(), ObjexxFCL::FArray1< T >.length_squared(), ObjexxFCL::CArray< typename >.length_squared(), ObjexxFCL::CArrayP< typename >.length_squared(), ObjexxFCL::ChunkVector< typename >.length_squared(), utility::graph::RingDetection< Graph >.LengthOfSmallestCycleWithVertex(), ligand_centroid(), ligand_rmsd(), numeric::nls.lm_enorm(), numeric::nls.lm_lmdif(), numeric::nls.lm_lmpar(), numeric::nls.lm_printout_std(), numeric::nls.lm_qrfac(), numeric::nls.lm_qrsolv(), numeric::VoxelArray< _Float, _Value >.load(), numeric::geometry::hashing::SixDOffsetTree.lookup(), ObjexxFCL.lowercase(), ObjexxFCL::Cstring.lowercase(), ObjexxFCL::Fstring.lowercase(), ObjexxFCL.lowercased(), main(), basic::database.make_compound_statement(), make_fragments(), make_mutation_tag(), make_mutations(), utility::json_spirit.map_to_obj(), numeric::MathNTensor< double, 2 >.MathNTensor(), numeric::model_quality.MatrixMult(), numeric::model_quality.maxsub(), rosetta_binders::utility_vector_binder< Vector, L, T, Allocator >.maybe_has_insertion_operator(), mean(), numeric::MultiDimensionalHistogram.mean_squared_error(), basic::sampling::orientations::Permute.Member(), merge_motifs(), minimize_test(), minimize_with_constraints(), numeric::interpolation.multilinear_interpolation(), numeric::kinematic_closure.multMatrix(), numeric::kinematic_closure.multTransMatrix(), mutate_and_score_RNP(), mutate_random_residue(), mutate_to_ala(), my_main(), utility::options::OptionCollection.n_part(), numeric::geometry::hashing::xyzStripeHash.nbcount(), numeric::geometry::hashing::xyzStripeHashWithMeta< float >.nbcount(), numeric::geometry::hashing::xyzStripeHash.nbcount_raw(), utility::graph::DisjointSets.nodes_in_set(), ObjexxFCL::Chunk< T >.non_preserving_resize(), ObjexxFCL::ChunkVector< typename >.non_preserving_resize(), nucleobase_probe_score_test(), numeric::MultiDimensionalHistogram.num_bins(), utility::json_spirit.obj_to_map(), ONE_CLASS_Q.ONE_CLASS_Q(), utility::io::izstream.open_ifstream(), ObjexxFCL.operator!=(), numeric::interpolation::InterpolatedPotential< N >.operator()(), numeric::VoxelArray< _Float, _Value >.operator()(), numeric::Polynomial_1d.operator()(), utility::json_spirit::Value_impl< Config >::Variant_converter_visitor.operator()(), numeric::interpolation::TempStruct< T, N >.operator()(), ObjexxFCL::FArray1< T >.operator()(), ObjexxFCL::FArray1D< double >.operator()(), ObjexxFCL::KeyFArray1D< typename >.operator()(), numeric::MathNTensor< double, 2 >.operator()(), utility::keys::ClassKeyMap< K, T, C >.operator()(), utility::keys::SmallKeyMap< K, T >.operator()(), ObjexxFCL::FArray1A< typename >.operator()(), ObjexxFCL::FArray1P< typename >.operator()(), numeric.operator*(), ObjexxFCL::ubyte.operator*=(), ObjexxFCL::byte.operator*=(), ObjexxFCL::FArray2< T >.operator*=(), ObjexxFCL::Chunk< T >.operator*=(), ObjexxFCL::CArray< typename >.operator*=(), ObjexxFCL::FArray< T >.operator*=(), ObjexxFCL::CArrayP< typename >.operator*=(), ObjexxFCL::ChunkVector< typename >.operator*=(), numeric::MathMatrix< float >.operator*=(), ObjexxFCL::ubyte.operator+=(), ObjexxFCL::byte.operator+=(), utility::BitVector< B >.operator+=(), ObjexxFCL::Chunk< T >.operator+=(), ObjexxFCL::CArray< typename >.operator+=(), ObjexxFCL::FArray< T >.operator+=(), ObjexxFCL::CArrayP< typename >.operator+=(), ObjexxFCL::ChunkVector< typename >.operator+=(), utility.operator-(), ObjexxFCL::ubyte.operator-=(), ObjexxFCL::byte.operator-=(), utility::BitSet< B >.operator-=(), utility::BitVector< B >.operator-=(), ObjexxFCL::Chunk< T >.operator-=(), ObjexxFCL::CArray< typename >.operator-=(), ObjexxFCL::FArray< T >.operator-=(), ObjexxFCL::CArrayP< typename >.operator-=(), ObjexxFCL::ChunkVector< typename >.operator-=(), ObjexxFCL::byte.operator/=(), ObjexxFCL::ubyte.operator/=(), ObjexxFCL::Chunk< T >.operator/=(), ObjexxFCL::CArray< typename >.operator/=(), ObjexxFCL::FArray< T >.operator/=(), ObjexxFCL::CArrayP< typename >.operator/=(), ObjexxFCL::ChunkVector< typename >.operator/=(), ObjexxFCL.operator<(), ObjexxFCL.operator<<(), numeric::kinematic_closure.operator<<(), utility.operator<<(), numeric.operator<<(), utility::options.operator<<(), ObjexxFCL.operator<=(), ObjexxFCL::ubyte.operator=(), ObjexxFCL::byte.operator=(), basic::svd::SVD_Solver.operator=(), basic::datacache::DataCache< CacheableData >.operator=(), ObjexxFCL::Chunk< T >.operator=(), utility::keys::KeyVector< K, T >.operator=(), utility::keys::ClassKeyMap< K, T, C >.operator=(), utility::keys::SmallKeyMap< K, T >.operator=(), utility::keys::ClassKeyVector< K, T, C >.operator=(), utility::keys::SmallKeyVector< PathVectorOptionKey, PathVectorOption >.operator=(), ObjexxFCL::CArray< typename >.operator=(), utility::tag::Tag.operator=(), ObjexxFCL::ChunkVector< typename >.operator=(), ObjexxFCL::CArrayP< typename >.operator=(), ObjexxFCL::FArray< T >.operator=(), ObjexxFCL.operator==(), ObjexxFCL.operator>(), ObjexxFCL.operator>=(), ObjexxFCL::format.operator>>(), ObjexxFCL::Chunk< T >.operator[](), ObjexxFCL::FArray1D< double >.operator[](), ObjexxFCL::KeyFArray1D< typename >.operator[](), utility::keys::ClassKeyMap< K, T, C >.operator[](), ObjexxFCL::FArray3D< typename >.operator[](), ObjexxFCL::KeyFArray3D< typename >.operator[](), ObjexxFCL::FArray4D< typename >.operator[](), ObjexxFCL::KeyFArray4D< typename >.operator[](), ObjexxFCL::KeyFArray2D< typename >.operator[](), utility::keys::SmallKeyMap< K, T >.operator[](), ObjexxFCL::FArray5D< typename >.operator[](), ObjexxFCL::FArray2D< double >.operator[](), ObjexxFCL::KeyFArray5D< typename >.operator[](), ObjexxFCL::FArray6D< typename >.operator[](), ObjexxFCL::KeyFArray6D< typename >.operator[](), ObjexxFCL::FArray< T >.operator[](), ObjexxFCL::Cstring.operator[](), utility::keys::ClassKeyVector< K, T, C >.operator[](), utility::keys::SmallKeyVector< PathVectorOptionKey, PathVectorOption >.operator[](), ObjexxFCL::CArray< typename >.operator[](), ObjexxFCL::CArrayP< typename >.operator[](), fmt::ArgList.operator[](), utility::BitVector< B >.operator|=(), basic::sampling::orientations::QuatSet.Orientation(), utility::json_spirit::Generator< Value_type, Ostream_type >.output(), utility::xsd_util.output_all_tag_options(), utility::json_spirit::Generator< Value_type, Ostream_type >.output_array_or_obj(), output_canonical_base_pair_steps(), output_general_base_pair_steps(), output_packstat(), output_packstat_pdb(), output_results(), ScoreFragmentSetMover.overlap_score(), apps::public1::scenarios::chemically_conjugated_docking.pack_extra_bodies(), pep_rmsd_analysis(), PerformanceBenchmark.PerformanceBenchmark(), numeric::random::mt19937_RG.period_certification(), basic::sampling::orientations::Permute.Permute(), numeric::kinematic_closure.point_value16(), numeric::kinematic_closure.point_value2(), numeric::kinematic_closure.point_value4(), numeric::kinematic_closure.point_value6(), numeric::kinematic_closure.point_value8(), predict_chem_map_test(), predict_disorder(), utility::options::OptionCollection.prefix(), Prepare(), prepare_threaded_model(), numeric.principal_components_and_eigenvalues(), numeric.principal_components_and_eigenvalues_ndimensions(), basic::database::schema_generator::Index.print(), basic::database::schema_generator::ForeignKey.print(), basic::database::schema_generator::UniqueConstraint.print(), basic::sampling::orientations::QuatSet.Print(), basic::sampling::orientations::QuaternionGrid.print(), print_ddgs(), print_motifs(), supercharge.print_netcharge_and_mutations(), print_pep_analysis(), print_pep_csts(), numeric.print_probabilities(), numeric::kinematic_closure.printTranspose(), DockFragmentsMover.process_fragfile(), process_pose(), numeric.product(), basic.prof_show(), utility::factory::Factory< typename >.ptr_registry_transfer(), basic::sampling::orientations::QuaternionGrid.QuaternionGrid(), quick_score_test(), numeric::linear_algebra.qzhes(), numeric::linear_algebra.qzit(), numeric::linear_algebra.qzval(), numeric::linear_algebra.qzvec(), numeric::random.random_permutation(), numeric::IntervalSet< double >.random_point(), numeric::random::WeightedSampler.random_sample(), randomly_open_pose_loop(), ObjexxFCL.read_binary(), read_input_weights(), read_rama_map_file(), read_silent_input_as_library(), numeric.read_tensor_from_file(), numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >.real_eigenvalues(), numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >.real_eigenvectors(), reavrg(), Solver.reconstruct_gradient(), zinc_stats::ZincStatisticGenerator.recursively_model_rotamer_chis(), register_options(), relax_with_restraints_on_constres(), utility::signals::BufferedSignalHub< ReturnType, Signal >.release_buffer(), utility::keys::KeyLookup< K >.remove(), remove_dashes(), utility::signals::SignalHub< ReturnType, Signal >.remove_invalid(), numeric::UniformRotationSampler.remove_redundant(), numeric::VoxelGrid< typename >.RemoveObjects(), repack_test(), binder.replace(), numeric::MathMatrix< float >.replace_col(), numeric::MathNTensor< double, 2 >.replace_layer(), report_and_dump(), GlycanClashCheckMover.report_data(), basic::sampling::orientations::QuaternionGridManager.request_by_radius(), basic::sampling::orientations::QuaternionGridManager.request_by_size(), ObjexxFCL::Chunk< T >.reserve(), numeric::MultiDimensionalHistogram.reset_counts(), numeric::geometry.residual_squared_of_points_to_plane(), numeric::fourier::kiss_fft_state.resize(), numeric::VoxelArray< _Float, _Value >.resize(), numeric::fourier::kiss_dct_state.resize(), numeric::fourier::kiss_fftr_state.resize(), numeric::fourier::kiss_fftnd_state.resize(), numeric::fourier::kiss_fftndr_state.resize(), ObjexxFCL::Chunk< T >.resize(), ObjexxFCL::CArray< typename >.resize(), ObjexxFCL::CArrayP< typename >.resize(), ObjexxFCL::ChunkVector< typename >.resize(), numeric::MultiDimensionalHistogram.resize_counts(), numeric::random::mt19937_RG.restoreState(), ObjexxFCL::Cstring.right_justify(), ObjexxFCL::Fstring.right_justify(), ObjexxFCL::FArray2< T >.right_multiply_by_transpose(), numeric::model_quality.rms_fit(), numeric::model_quality.rms_wrapper_slow_and_correct(), numeric::model_quality.rmsfitca2(), numeric::model_quality.rmsfitca3(), rna_features_from_pose(), rna_fullatom_minimize_test(), rna_sequence_recovery_metrics(), rna_suitename(), rna_superimpose_and_graft_test(), numeric::kinematic_closure.rotateX(), numeric::kinematic_closure::radians.rotateX(), numeric::kinematic_closure.rotateY(), numeric::kinematic_closure::radians.rotateY(), numeric::kinematic_closure.rotateZ(), numeric::kinematic_closure::radians.rotateZ(), round(), numeric::model_quality.rsym_evector(), numeric::model_quality.rsym_rotation(), numeric::xyzTransform< numeric::Real >.rt6(), OptionCollectionBenchmark.run(), ScoreBenchmark.run(), DesignBenchmark.run(), PDB_IOBenchmark.run(), LigandDockBenchmark.run(), DockingBenchmark< dock, TScale >.run(), SmallMoverBenchmark.run(), MinimizerBenchmark< sft, TScale >.run(), ShearMoverBenchmark.run(), ResidueTypeBenchmark.run(), ScoreEachBenchmark.run(), XMLParseBenchmark.run(), LigandDockScriptBenchmark.run(), run(), DockFragmentsMover.run(), FragmentAssemblyMover.run(), ConsensusFragmentMover.run(), run_pep_prep(), basic::svd::SVD_Solver.run_score_svd_on_matrix(), basic::svd::SVD_Solver.run_score_svd_without_solving(), RunPepSpec(), numeric::geometry::hashing::xyzStripeHash.sanity_check(), numeric::geometry::hashing::xyzStripeHashWithMeta< float >.sanity_check(), numeric::VoxelArray< _Float, _Value >.save(), numeric::random::mt19937_RG.saveState(), FragmentAssemblyMover.score(), numeric::kinematic_closure.scpn(), numeric::kinematic_closure::radians.scpn(), Solver.select_working_set(), sequence_tolerance_main(), ObjexxFCL::FArray2< T >.set_diagonal(), basic::Emitter.set_indent(), numeric::interpolation::Histogram< typename, typename >.set_interpolator(), basic::svd::SVD_Solver.set_matrix_A(), set_pattern(), utility::sql_database::DatabaseSessionManager.set_postgres_schema_search_path(), supercharge.set_resfile(), supercharge.set_resfile_AvNAPSA(), supercharge.set_surface(), numeric::MathMatrix< float >.set_unit(), numeric::MathNTensor< double, 2 >.set_value(), basic::svd::SVD_Solver.set_vector_b(), utility::graph::DisjointSets.sets(), numeric::random::mt19937_RG.setSeed(), MinimizerBenchmark< sft, TScale >.setUp(), setup_align_atom_map(), setup_alignment_map(), setup_ca_constraints(), zinc2_homodimer_setup.setup_homodimer(), setup_mask(), zinc2_homodimer_design.setup_metalsite(), zinc1_homodimer_design.setup_metalsite_constraints(), setup_per_residue_rmsd_atom_map(), numeric::fourier::SHT.setup_Pmls(), setup_rmsd_atom_map(), basic.setup_tag2string(), zinc1_homodimer_design.setup_taskfactory(), zinc2_homodimer_design.setup_taskfactory_scorefunction_movers(), numeric::fourier::SHT.setup_Wig(), numeric::random.sformat_idxof(), numeric::fourier::SHT.sharm_invTransform(), numeric::fourier::SHT.sharm_transform(), shift_angles(), show(), numeric::Polynomial_1d.show(), utility::options::OptionCollection.show_accessed_options(), utility::options.show_accessed_options_T(), utility::options::OptionCollection.show_all(), utility::options::OptionCollection.show_all_hier(), utility::options::OptionCollection.show_help(), utility::options::OptionCollection.show_help_hier(), utility::options::OptionCollection.show_inaccessed_user_options(), utility::options::OptionCollection.show_table_text(), utility::options::OptionCollection.show_table_Wiki(), utility::options::OptionCollection.show_unused_options(), utility::options.show_unused_options_T(), utility::options::OptionCollection.show_user(), ObjexxFCL::Chunk< T >.shrink(), sigmoid_train(), simple_minimization(), simple_packing(), numeric::kinematic_closure.sincos(), numeric::kinematic_closure::radians.sincos(), slice_ellipsoid_envelope(), utility::keys::SmallKeyMap< K, T >.SmallKeyMap(), numeric::fourier::SHT.so3_correlate(), numeric::fourier::SHT.so3CombineCoef(), Solver.Solve(), solve_c_svc(), solve_epsilon_svr(), solve_nu_svc(), solve_nu_svr(), solve_one_class(), numeric::kinematic_closure.solve_sturm(), utility::keys::ClassKeyVector< K, T, C >.sort(), spanfile_for_each_chain(), numeric::fourier::SHT.sph_standardize(), numeric::interpolation::spline.spline_second_derivative(), binder.split(), utility.split(), utility.split_by_newlines(), utility.split_to_list(), utility.split_to_set(), utility::Inline_File_Provider.standardise_filename(), numeric::MultiDimensionalHistogram.start(), basic::options.start_files(), store_energies(), utility.string2float(), utility.string2int(), utility.string2Real(), utility.string2Size(), utility.string_split(), utility.string_split_multi_delim(), utility.string_split_simple(), utility.string_to_sha1(), utility::json_spirit.substitute_esc_chars(), utility::options::OptionCollection.suffix(), sum(), numeric::geometry::hashing::SixDOffsetTree.sum_radius(), basic::svd::SVD_Solver.svbksb(), SVC_Q.SVC_Q(), basic::svd::SVD_Solver.SVD_Solver(), numeric::linear_algebra.svdcmp(), basic::svd::SVD_Solver.svdcmp(), svm_binary_svc_probability(), svm_check_parameter(), svm_cross_validation(), svm_free_model_content(), svm_get_labels(), svm_get_sv_indices(), svm_group_classes(), svm_load_model(), svm_predict_probability(), svm_predict_values(), svm_save_model(), svm_svr_probability(), svm_train(), svm_train_one(), ObjexxFCL::format.SW(), utility.swap4_aligned(), numeric::MathMatrix< float >.swap_cols(), Kernel.swap_index(), numeric::MathMatrix< float >.swap_rows(), ObjexxFCL::FArray2< T >.symmetric(), basic::ComparingTracer.t_flush(), basic::database.table_exists(), basic::database::schema_generator::Schema.table_schema_statements(), HDdesignMover.task_constraint_setup(), binder.template_specialization(), numeric::kinematic_closure.test_bridgeObjects(), numeric::kinematic_closure.test_chainParams(), numeric::kinematic_closure.test_chainTORS(), numeric::kinematic_closure.test_chainXYZ(), test_cofactor(), numeric::kinematic_closure.test_dixon(), numeric::kinematic_closure.test_frame(), numeric::kinematic_closure.test_rotateX(), test_sugar(), numeric::kinematic_closure::radians.to_degrees(), ObjexxFCL::FArray2< T >.to_diag(), ObjexxFCL::FArray2< T >.to_identity(), numeric::kinematic_closure::radians.to_radians(), numeric::kinematic_closure.torsion(), numeric::kinematic_closure::radians.torsion(), numeric::interpolation::spline::CubicSpline.train(), numeric::interpolation::spline::PolycubicSpline< N >.train(), numeric::MathMatrix< float >.transpose(), ObjexxFCL::FArray2< T >.transpose(), ObjexxFCL.transposed(), numeric::kinematic_closure.triaxialCoefficients(), numeric::kinematic_closure::radians.triaxialCoefficients(), utility::options::OptionCollection.trim(), utility::options::OptionCollection.trimmed(), utility::file.trytry_ifstream_open(), utility::file.trytry_ofstream_open(), unbound_protein_minimization(), numeric::UniformRotationSampler.UniformRotationSampler(), ObjexxFCL.unique(), ObjexxFCL.uniqued(), Solver.update_alpha_status(), numeric::random::WeightedSampler.update_cumulative_distribution(), ObjexxFCL.uppercase(), ObjexxFCL::Cstring.uppercase(), ObjexxFCL::Fstring.uppercase(), ObjexxFCL.uppercased(), rosetta_binders::utility_vector_binder< Vector, L, T, Allocator >.utility_vector_binder(), numeric::MathNTensor< double, 2 >.value(), utility::options::ResidueChainVectorOption.values_of(), numeric::geometry.vector_normal_to_ring_plane_of_best_fit(), numeric::kinematic_closure.vectorDiff(), numeric::kinematic_closure.vectorsEqual(), numeric::geometry::hashing::xyzStripeHash.visit(), numeric::geometry::hashing::xyzStripeHashWithMeta< float >.visit(), numeric::geometry::hashing::xyzStripeHash.visit_lax(), numeric::geometry::hashing::xyzStripeHashWithMeta< float >.visit_lax(), numeric::VoxelArray< _Float, _Value >.VoxelArray(), basic::sampling::orientations::QuatSet.Weight(), numeric::fourier::SO3coeffs.wignerSynthesis(), numeric::fourier::SO3coeffs.wignerSynthesisDiffSign(), numeric::fourier::SO3coeffs.wignerSynthesisSameSign(), utility::options::OptionCollection.wrapped(), ObjexxFCL.write_binary(), basic::Emitter.write_raw(), basic::database::insert_statement_generator::InsertGenerator.write_to_database_sequential(), rosetta_binders.xyzMatrix_add_on_binder(), rosetta_binders.xyzVector_add_on_binder(), and basic::TracerImpl.~TracerImpl().

tuple test.T150_PyMOL_Integration.mm = pyrosetta.MoveMap()
tuple test.T150_PyMOL_Integration.observer = rosetta.protocols.moves.AddPyMOLObserver(pose)
float test.T150_PyMOL_Integration.phi = 0.0
tuple test.T150_PyMOL_Integration.pose = pyrosetta.pose_from_sequence('EVAAAVAT')
float test.T150_PyMOL_Integration.psi = 0.0
tuple test.T150_PyMOL_Integration.pymol = pyrosetta.PyMOLMover()
tuple test.T150_PyMOL_Integration.scorefxn = pyrosetta.get_fa_scorefxn()