Rosetta  2020.37
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Variables
basic::options::OptionKeys::antibody::design Namespace Reference

Variables

BooleanOptionKey const design
 
BooleanOptionKey const view
 
StringOptionKey const base_cdr_instructions
 
StringOptionKey const cdr_instructions
 
StringOptionKey const antibody_database
 
BooleanOptionKey const paper_ab_db
 
StringOptionKey const paper_ab_db_path
 
StringVectorOptionKey const seq_design_cdrs
 
StringVectorOptionKey const graft_design_cdrs
 
StringVectorOptionKey const primary_cdrs
 
StringOptionKey const mintype
 
StringVectorOptionKey const disallow_aa
 
IntegerOptionKey const top_designs
 
BooleanOptionKey const high_mem_mode
 
IntegerOptionKey const cdr_set_cache_limit
 
StringOptionKey const design_protocol
 
BooleanOptionKey const run_relax
 
BooleanOptionKey const run_interface_analyzer
 
StringVectorOptionKey const paratope
 
StringVectorOptionKey const epitope
 
BooleanOptionKey const use_epitope_constraints
 
RealOptionKey const dihedral_cst_weight
 
RealOptionKey const atom_pair_cst_weight
 
BooleanOptionKey const global_dihedral_cst_scoring
 
BooleanOptionKey const global_atom_pair_cst_scoring
 
BooleanOptionKey const do_dock
 
IntegerOptionKey const outer_cycle_rounds
 
IntegerOptionKey const inner_cycle_rounds
 
IntegerOptionKey const dock_cycle_rounds
 
RealOptionKey const interface_dis
 
RealOptionKey const neighbor_dis
 
BooleanOptionKey const use_outliers
 
BooleanOptionKey const use_H3_graft_outliers
 
BooleanOptionKey const use_only_H3_kinked
 
BooleanOptionKey const design_antigen
 
BooleanOptionKey const design_framework
 
BooleanOptionKey const conservative_framework_design
 
BooleanOptionKey const design_H3_stem
 
BooleanOptionKey const design_proline
 
RealOptionKey const sample_zero_probs_at
 
BooleanOptionKey const force_mutate_framework_for_cluster
 
BooleanOptionKey const no_profile_probabilities
 
IntegerOptionKey const seq_design_stats_cutoff
 
IntegerOptionKey const seq_design_profile_samples
 
BooleanOptionKey const idealize_graft_cdrs
 
StringVectorOptionKey const add_backrub_pivots
 
RealOptionKey const inner_kt
 
RealOptionKey const outer_kt
 
BooleanOptionKey const random_start
 
BooleanOptionKey const adapt_graft
 
BooleanOptionKey const enable_adapt_graft_cartesian
 
BooleanOptionKey const remove_antigen
 
BooleanOptionKey const add_graft_log_to_pdb
 
BooleanOptionKey const mutate_framework_for_cluster
 

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::antibody::design::adapt_graft

Referenced by add_rosetta_options_5().

StringVectorOptionKey const basic::options::OptionKeys::antibody::design::add_backrub_pivots

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::add_graft_log_to_pdb

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::design::antibody_database

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::antibody::design::atom_pair_cst_weight

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::design::base_cdr_instructions

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::design::cdr_instructions

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::antibody::design::cdr_set_cache_limit

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::conservative_framework_design

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::design

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::design_antigen

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::design_framework

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::design_H3_stem

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::design_proline

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::design::design_protocol

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::antibody::design::dihedral_cst_weight

Referenced by add_rosetta_options_5().

StringVectorOptionKey const basic::options::OptionKeys::antibody::design::disallow_aa

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::do_dock

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::antibody::design::dock_cycle_rounds

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::enable_adapt_graft_cartesian

Referenced by add_rosetta_options_5().

StringVectorOptionKey const basic::options::OptionKeys::antibody::design::epitope

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::force_mutate_framework_for_cluster

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::global_atom_pair_cst_scoring

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::global_dihedral_cst_scoring

Referenced by add_rosetta_options_5().

StringVectorOptionKey const basic::options::OptionKeys::antibody::design::graft_design_cdrs

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::high_mem_mode

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::idealize_graft_cdrs

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::antibody::design::inner_cycle_rounds

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::antibody::design::inner_kt

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::antibody::design::interface_dis

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::design::mintype

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::mutate_framework_for_cluster

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::antibody::design::neighbor_dis

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::no_profile_probabilities

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::antibody::design::outer_cycle_rounds

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::antibody::design::outer_kt

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::paper_ab_db

Referenced by add_rosetta_options_5().

StringOptionKey const basic::options::OptionKeys::antibody::design::paper_ab_db_path

Referenced by add_rosetta_options_5().

StringVectorOptionKey const basic::options::OptionKeys::antibody::design::paratope

Referenced by add_rosetta_options_5().

StringVectorOptionKey const basic::options::OptionKeys::antibody::design::primary_cdrs

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::random_start

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::remove_antigen

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::run_interface_analyzer

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::run_relax

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::antibody::design::sample_zero_probs_at

Referenced by add_rosetta_options_5().

StringVectorOptionKey const basic::options::OptionKeys::antibody::design::seq_design_cdrs

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::antibody::design::seq_design_profile_samples

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::antibody::design::seq_design_stats_cutoff

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::antibody::design::top_designs

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::use_epitope_constraints

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::use_H3_graft_outliers

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::use_only_H3_kinked

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::use_outliers

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::antibody::design::view