Rosetta  2019.47
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Namespaces | Variables
basic::options::OptionKeys::lh Namespace Reference

Namespaces

 fragpdb
 
 symfragrm
 

Variables

BooleanOptionKey const lh
 
IntegerVectorOptionKey const loopsizes
 
IntegerOptionKey const num_partitions
 
PathOptionKey const db_path
 
BooleanOptionKey const exclude_homo
 
BooleanOptionKey const bss
 
StringOptionKey const refstruct
 
StringOptionKey const homo_file
 
RealVectorOptionKey const createdb_rms_cutoff
 
RealOptionKey const min_bbrms
 
RealOptionKey const max_bbrms
 
RealOptionKey const min_rms
 
RealOptionKey const max_rms
 
BooleanOptionKey const filter_by_phipsi
 
IntegerOptionKey const max_radius
 
IntegerOptionKey const max_struct
 
IntegerOptionKey const max_struct_per_radius
 
RealOptionKey const grid_space_multiplier
 
RealOptionKey const grid_angle_multiplier
 
IntegerOptionKey const skim_size
 
IntegerOptionKey const rounds
 
StringOptionKey const jobname
 
IntegerOptionKey const max_lib_size
 
IntegerOptionKey const max_emperor_lib_size
 
IntegerOptionKey const max_emperor_lib_round
 
IntegerOptionKey const library_expiry_time
 
StringOptionKey const objective_function
 
IntegerOptionKey const expire_after_rounds
 
StringOptionKey const mpi_resume
 
StringOptionKey const mpi_feedback
 
IntegerOptionKey const mpi_batch_relax_chunks
 
IntegerOptionKey const mpi_batch_relax_absolute_max
 
IntegerOptionKey const mpi_outbound_wu_buffer_size
 
IntegerOptionKey const mpi_loophash_split_size
 
RealOptionKey const mpi_metropolis_temp
 
IntegerOptionKey const mpi_save_state_interval
 
BooleanOptionKey const mpi_master_save_score_only
 
IntegerOptionKey const max_loophash_per_structure
 
RealOptionKey const prob_terminus_ramapert
 
RealOptionKey const rms_limit
 
RealOptionKey const similarity_reference
 
BooleanOptionKey const centroid_only
 
BooleanOptionKey const write_centroid_structs
 
BooleanOptionKey const write_all_fa_structs
 
BooleanOptionKey const sandbox
 
BooleanOptionKey const create_db
 
FileOptionKey const sample_weight_file
 
RealOptionKey const radius_size
 
IntegerOptionKey const max_ref_lib_size
 
StringVectorOptionKey const multi_objective_functions
 
StringVectorOptionKey const additional_objective_functions
 
RealOptionKey const edensity_weight_for_sampling
 
StringOptionKey const mpi_master_schfile
 
IntegerVectorOptionKey const mpi_master_cpu_weight
 
StringOptionKey const mpi_loophash_scan_type
 
BooleanOptionKey const mpi_read_structure_for_emperor
 
BooleanOptionKey const mpi_packmin_init
 
IntegerOptionKey const max_sample_per_structure
 
StringOptionKey const loop_string
 
StringOptionKey const seg_string
 
StringVectorOptionKey const loopresdef
 
BooleanOptionKey const pert_init_loop
 
RealOptionKey const NMdist
 
RealVectorOptionKey const objective_dominate_cut
 
RealVectorOptionKey const objective_cut_increment
 
StringOptionKey const similarity_method
 
StringOptionKey const similarity_measure
 
RealOptionKey const similarity_tolerance
 
RealOptionKey const parent_selection_kT
 
StringOptionKey const sim_replace_obj
 
RealOptionKey const ulr_mulfactor
 
BooleanOptionKey const filter_up_to_maxlib
 
BooleanOptionKey const minimize_after_nmsearch
 

Variable Documentation

StringVectorOptionKey const basic::options::OptionKeys::lh::additional_objective_functions

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::bss

Referenced by add_rosetta_options_9(), and run_mc().

BooleanOptionKey const basic::options::OptionKeys::lh::centroid_only

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::create_db

Referenced by add_rosetta_options_9().

RealVectorOptionKey const basic::options::OptionKeys::lh::createdb_rms_cutoff

Referenced by add_rosetta_options_9().

PathOptionKey const basic::options::OptionKeys::lh::db_path

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::edensity_weight_for_sampling

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::exclude_homo

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::expire_after_rounds

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::filter_by_phipsi

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::filter_up_to_maxlib

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::grid_angle_multiplier

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::grid_space_multiplier

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::homo_file

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::jobname
BooleanOptionKey const basic::options::OptionKeys::lh::lh

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::library_expiry_time

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::loop_string

Referenced by add_rosetta_options_9().

StringVectorOptionKey const basic::options::OptionKeys::lh::loopresdef

Referenced by add_rosetta_options_9().

IntegerVectorOptionKey const basic::options::OptionKeys::lh::loopsizes

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::max_bbrms

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_emperor_lib_round

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_emperor_lib_size

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_lib_size

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_loophash_per_structure

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_radius
IntegerOptionKey const basic::options::OptionKeys::lh::max_ref_lib_size

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::max_rms

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_sample_per_structure

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_struct

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_struct_per_radius

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::min_bbrms

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::min_rms

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::minimize_after_nmsearch

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_batch_relax_absolute_max

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_batch_relax_chunks

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::mpi_feedback

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::mpi_loophash_scan_type

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_loophash_split_size

Referenced by add_rosetta_options_9().

IntegerVectorOptionKey const basic::options::OptionKeys::lh::mpi_master_cpu_weight

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::mpi_master_save_score_only

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::mpi_master_schfile

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::mpi_metropolis_temp

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_outbound_wu_buffer_size

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::mpi_packmin_init

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::mpi_read_structure_for_emperor

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::mpi_resume

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_save_state_interval

Referenced by add_rosetta_options_9().

StringVectorOptionKey const basic::options::OptionKeys::lh::multi_objective_functions

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::NMdist

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::num_partitions

Referenced by add_rosetta_options_9().

RealVectorOptionKey const basic::options::OptionKeys::lh::objective_cut_increment

Referenced by add_rosetta_options_9().

RealVectorOptionKey const basic::options::OptionKeys::lh::objective_dominate_cut

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::objective_function

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::parent_selection_kT

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::pert_init_loop

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::prob_terminus_ramapert

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::radius_size

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::refstruct

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::rms_limit

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::rounds
FileOptionKey const basic::options::OptionKeys::lh::sample_weight_file

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::sandbox

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::seg_string

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::sim_replace_obj

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::similarity_measure

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::similarity_method

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::similarity_reference

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::similarity_tolerance

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::skim_size

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::ulr_mulfactor

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::write_all_fa_structs

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::write_centroid_structs

Referenced by add_rosetta_options_9().