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Variables
test.T400_Refinement Namespace Reference

Variables

float kT = 1.0
 
int n_moves = 10
 
tuple pose = core.import_pose.pose_from_file("../test/data/test_fragments.pdb")
 
tuple pose_frag = core.import_pose.pose_from_file("../test/data/test_fragments.pdb")
 
tuple movemap = MoveMap()
 
tuple fragset3mer = core.fragment.ConstantLengthFragSet(3, "../test/data/test3_fragments")
 
tuple fragset9mer = core.fragment.ConstantLengthFragSet(9, "../test/data/test9_fragments")
 
tuple mover_3mer = protocols.simple_moves.ClassicFragmentMover(fragset3mer, movemap)
 
tuple scorefxn = get_score_function()
 
tuple smallmover = protocols.simple_moves.SmallMover(movemap,kT,n_moves)
 
tuple shearmover = protocols.simple_moves.ShearMover(movemap, kT, n_moves)
 
tuple minmover = protocols.minimization_packing.MinMover()
 
tuple mc = MonteCarlo(pose, scorefxn, kT)
 
tuple ab = protocols.abinitio.ClassicAbinitio(fragset3mer, fragset9mer, movemap)
 
tuple seqmover = protocols.moves.SequenceMover()
 
tuple trialmover = TrialMover(mover_3mer, mc)
 

Variable Documentation

tuple test.T400_Refinement.ab = protocols.abinitio.ClassicAbinitio(fragset3mer, fragset9mer, movemap)
tuple test.T400_Refinement.fragset3mer = core.fragment.ConstantLengthFragSet(3, "../test/data/test3_fragments")
tuple test.T400_Refinement.fragset9mer = core.fragment.ConstantLengthFragSet(9, "../test/data/test9_fragments")
float test.T400_Refinement.kT = 1.0
tuple test.T400_Refinement.mc = MonteCarlo(pose, scorefxn, kT)
tuple test.T400_Refinement.minmover = protocols.minimization_packing.MinMover()

Referenced by main().

tuple test.T400_Refinement.movemap = MoveMap()
tuple test.T400_Refinement.mover_3mer = protocols.simple_moves.ClassicFragmentMover(fragset3mer, movemap)
int test.T400_Refinement.n_moves = 10
tuple test.T400_Refinement.pose = core.import_pose.pose_from_file("../test/data/test_fragments.pdb")
tuple test.T400_Refinement.pose_frag = core.import_pose.pose_from_file("../test/data/test_fragments.pdb")
tuple test.T400_Refinement.scorefxn = get_score_function()
tuple test.T400_Refinement.seqmover = protocols.moves.SequenceMover()

Referenced by main().

tuple test.T400_Refinement.shearmover = protocols.simple_moves.ShearMover(movemap, kT, n_moves)
tuple test.T400_Refinement.smallmover = protocols.simple_moves.SmallMover(movemap,kT,n_moves)
tuple test.T400_Refinement.trialmover = TrialMover(mover_3mer, mc)