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Variables
test.Workshop8test Namespace Reference

Variables

tuple pose = pose_from_file("../test/data/test_in.pdb")
 
tuple ft = FoldTree()
 
tuple pmm = PyMOLMover()
 
tuple movemap = MoveMap()
 
tuple loop1 = protocols.loops.Loop(15, 24, 19)
 
tuple ccd = protocols.loops.loop_closure.ccd.CCDLoopClosureMover(loop1, movemap)
 
tuple loop2 = protocols.loops.Loop(78, 83, 80)
 
tuple loops = protocols.loops.Loops()
 
tuple reference_pose = pose_from_file("../test/data/test_in.pdb")
 
tuple score = get_score_function()
 
tuple output = tempfile.mkstemp()
 
tuple jd = PyJobDistributor(output, 1, score)
 
tuple lrms = loop_rmsd(pose, reference_pose, loops, True)
 
tuple loop_refine = LoopMover_Refine_CCD(loops)
 
tuple sw_low = SwitchResidueTypeSetMover("centroid")
 
tuple kic_perturb = protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC(loops)
 
tuple sw_high = SwitchResidueTypeSetMover("fa_standard")
 
tuple kic_refine = protocols.loops.loop_mover.refine.LoopMover_Refine_KIC(loops)
 
tuple kic_mover = KinematicMover()
 

Variable Documentation

tuple test.Workshop8test.ccd = protocols.loops.loop_closure.ccd.CCDLoopClosureMover(loop1, movemap)

Referenced by add_rosetta_options_4().

tuple test.Workshop8test.ft = FoldTree()
tuple test.Workshop8test.jd = PyJobDistributor(output, 1, score)
tuple test.Workshop8test.kic_mover = KinematicMover()
tuple test.Workshop8test.kic_perturb = protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC(loops)
tuple test.Workshop8test.kic_refine = protocols.loops.loop_mover.refine.LoopMover_Refine_KIC(loops)
tuple test.Workshop8test.loop1 = protocols.loops.Loop(15, 24, 19)
tuple test.Workshop8test.loop2 = protocols.loops.Loop(78, 83, 80)

Referenced by add_rosetta_options_6().

tuple test.Workshop8test.loop_refine = LoopMover_Refine_CCD(loops)
tuple test.Workshop8test.loops = protocols.loops.Loops()
tuple test.Workshop8test.lrms = loop_rmsd(pose, reference_pose, loops, True)
tuple test.Workshop8test.movemap = MoveMap()
tuple test.Workshop8test.output = tempfile.mkstemp()
tuple test.Workshop8test.pmm = PyMOLMover()
tuple test.Workshop8test.pose = pose_from_file("../test/data/test_in.pdb")
tuple test.Workshop8test.reference_pose = pose_from_file("../test/data/test_in.pdb")

Referenced by mg_modeler_test().

tuple test.Workshop8test.score = get_score_function()
tuple test.Workshop8test.sw_high = SwitchResidueTypeSetMover("fa_standard")
tuple test.Workshop8test.sw_low = SwitchResidueTypeSetMover("centroid")