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Variables
basic::options::OptionKeys::score::fiber_diffraction Namespace Reference

Variables

BooleanOptionKey const fiber_diffraction
 
FileOptionKey const layer_lines
 
RealOptionKey const a
 
RealOptionKey const b
 
RealOptionKey const p
 
RealOptionKey const radius
 
RealOptionKey const resolution_cutoff_low
 
RealOptionKey const resolution_cutoff_high
 
IntegerOptionKey const max_bessel_order
 
IntegerOptionKey const cn_symmetry
 
RealOptionKey const b_factor
 
RealOptionKey const b_factor_solv
 
RealOptionKey const b_factor_solv_K
 
RealOptionKey const grid_reso
 
IntegerOptionKey const grid_r
 
IntegerOptionKey const grid_phi
 
IntegerOptionKey const grid_z
 
RealOptionKey const qfht_K1
 
RealOptionKey const qfht_K2
 
IntegerOptionKey const chi_iterations
 
BooleanOptionKey const rfactor_refinement
 
BooleanOptionKey const output_fiber_spectra
 
IntegerOptionKey const gpu_processor
 
RealOptionKey const centroid_density_mass
 

Variable Documentation

RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::a

Referenced by add_rosetta_options_2(), numeric::angle_radians(), numeric::angles_between_0_180(), basic::calc_quadratic(), numeric::alignment::QCPKernel< Real >::calc_rmsd_Theobald_method(), ObjexxFCL::cross(), ObjexxFCL::cross_product(), numeric::cubic_polynomial_from_spline(), numeric::expression_parser::MultiplyExpression::differentiate(), numeric::dihedral_radians(), ObjexxFCL::distance(), ObjexxFCL::distance_squared(), ObjexxFCL::dot(), ObjexxFCL::dot_product(), numeric::linear_algebra::epslon(), basic::sampling::orientations::Quaternion::euler(), binder::function_arguments_for_lambda(), binder::function_arguments_for_py_overload(), numeric::UniformRotationSampler::generateIcosahedralSamples(), get_gremlin_d_and_width(), numeric::xyzTransform< numeric::Real >::hash64(), numeric::interpolation::periodic_range::full::interpolated(), numeric::interpolation::periodic_range::half::interpolated(), numeric::xyzMatrix< T >::inverse(), numeric::fourier::local_max(), main(), make_fragments(), numeric::linear_algebra::minimum_bounding_ellipse(), numeric::interpolation::multilinear_interpolation(), ObjexxFCL::operator<<(), numeric::kinematic_closure::operator<<(), basic::sampling::orientations::Permute::Permute(), numeric::linear_algebra::point_in_ellipse(), numeric::linear_algebra::qzhes(), numeric::linear_algebra::qzit(), numeric::linear_algebra::qzval(), numeric::linear_algebra::qzvec(), ObjexxFCL::read_binary(), ObjexxFCL::CArray< typename >::resize(), ObjexxFCL::CArrayP< typename >::resize(), numeric::linear_algebra::rgg(), numeric::model_quality::rsym_eigenval(), numeric::kinematic_closure::sincos(), numeric::kinematic_closure::radians::sincos(), numeric::interpolation::spline::spline_interpolate(), numeric::linear_algebra::sum_of_square_differences(), numeric::linear_algebra::svdcmp(), utility::swap(), numeric::kinematic_closure::test_bondangle(), numeric::kinematic_closure::test_eucDistance(), numeric::kinematic_closure::test_scpn(), numeric::kinematic_closure::test_torsion(), ObjexxFCL::transposed(), numeric::statistics::w(), and ObjexxFCL::write_binary().

RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::b

Referenced by binder::Context::add(), add_rosetta_options_2(), numeric::angle_radians(), numeric::angles_between_0_180(), binder::base_default_default_constructor_available(), binder::Context::bind(), binder::bind_member_functions_for_call_back(), binder::ClassBinder::bind_nested_classes(), binder::binding_template_bases(), basic::PyTracer::buf(), basic::calc_quadratic(), numeric::alignment::QCPKernel< Real >::calc_rmsd_Theobald_method(), binder::Context::create_all_nested_namespaces(), ObjexxFCL::cross(), ObjexxFCL::cross_product(), numeric::cubic_polynomial_from_spline(), numeric::geometry::hashing::xyzStripeHash::debug_pdb(), numeric::expression_parser::MultiplyExpression::differentiate(), numeric::dihedral_radians(), ObjexxFCL::distance(), ObjexxFCL::distance_squared(), ObjexxFCL::dot(), ObjexxFCL::dot_product(), numeric::linear_algebra::epslon(), utility::pointer::equal(), basic::sampling::orientations::Quaternion::euler(), ObjexxFCL::FArray1D< double >::FArray1D(), find_neighbors_directional(), numeric::UniformRotationSampler::generateIcosahedralSamples(), get_gremlin_d_and_width(), numeric::xyzTransform< numeric::Real >::hash64(), numeric::geometry::hashing::xyzStripeHash::init(), binder::is_callback_structure_constructible(), binder::is_callback_structure_needed(), binder::is_inherited_from_enable_shared_from_this(), ObjexxFCL::Fstring::is_type(), ObjexxFCL::KeyFArray1D< typename >::KeyFArray1D(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >::legal_string(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >::legal_string(), main(), binder::ClassBinder::maybe_base_classes(), numeric::linear_algebra::minimum_bounding_ellipse(), numeric::kinematic_closure::modrf(), utility::keys::operator!=(), ObjexxFCL::operator!=(), utility::operator+(), ObjexxFCL::operator+(), utility::operator-(), ObjexxFCL::operator-(), numeric::kinematic_closure::operator<<(), utility::operator|(), basic::sampling::orientations::Permute::Permute(), numeric::linear_algebra::point_in_ellipse(), numeric::linear_algebra::qzhes(), numeric::linear_algebra::qzit(), numeric::linear_algebra::qzval(), numeric::linear_algebra::qzvec(), numeric::linear_algebra::rgg(), numeric::model_quality::rsym_eigenval(), basic::svd::SVD_Solver::set_vector_b(), numeric::geometry::hashing::xyzStripeHashWithMeta< float >::short_max(), numeric::geometry::hashing::xyzStripeHash::short_max(), numeric::geometry::hashing::xyzStripeHashWithMeta< float >::short_min(), numeric::geometry::hashing::xyzStripeHash::short_min(), binder::Context::sort_binders(), numeric::interpolation::spline::spline_interpolate(), utility::keys::KeyLookup< K >::stripped_whitespace(), numeric::kinematic_closure::test_bondangle(), numeric::kinematic_closure::test_eucDistance(), numeric::kinematic_closure::test_scpn(), numeric::kinematic_closure::test_torsion(), numeric::kinematic_closure::triaxialCoefficients(), numeric::kinematic_closure::radians::triaxialCoefficients(), ObjexxFCL::Fstring::type_of(), numeric::geometry::hashing::xyzStripeHashWithMeta< float >::ushort_max(), numeric::geometry::hashing::xyzStripeHash::ushort_max(), numeric::geometry::hashing::xyzStripeHashWithMeta< float >::ushort_min(), numeric::geometry::hashing::xyzStripeHash::ushort_min(), BinderVisitor::VisitCXXRecordDecl(), BinderVisitor::VisitEnumDecl(), BinderVisitor::VisitFunctionDecl(), and utility::options::OptionCollection::wrapped().

RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::b_factor

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::b_factor_solv

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::b_factor_solv_K

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::centroid_density_mass

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::score::fiber_diffraction::chi_iterations

Referenced by add_rosetta_options_2(), and main().

IntegerOptionKey const basic::options::OptionKeys::score::fiber_diffraction::cn_symmetry

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::fiber_diffraction::fiber_diffraction

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::score::fiber_diffraction::gpu_processor

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::score::fiber_diffraction::grid_phi

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::score::fiber_diffraction::grid_r

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::grid_reso

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::score::fiber_diffraction::grid_z

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::score::fiber_diffraction::layer_lines

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::score::fiber_diffraction::max_bessel_order

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::fiber_diffraction::output_fiber_spectra

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::p

Referenced by binder::add_relevant_include_for_decl(), add_rosetta_options_2(), binder::bind_function(), utility::down_cast(), ObjexxFCL::format::F(), basic::resource_manager::locator::FileStream::FileStream(), ObjexxFCL::fixed_Fstring_of(), ObjexxFCL::fixed_string_of(), fmt::BasicFormatter< CharType, ArgFormatter >::format(), binder::function_arguments_for_py_overload(), ObjexxFCL::general_Fstring_of(), ObjexxFCL::general_string_of(), fmt::BasicWriter< Char >::get(), numeric::interpolation::spline::SplineGenerator::get_interpolator(), get_max_and_intervals(), harvest_scores(), numeric::hsv_to_rgb(), numeric::geometry::hashing::SixDOffsetTree::init(), numeric::interpolation::InterpolatedPotential< N >::InterpolatedPotential(), binder::is_bindable(), numeric::fourier::kf_bfly_generic(), numeric::fourier::kf_factor(), numeric::fourier::kf_work(), numeric::statistics::kl_divergence(), numeric::geometry::hashing::SixDOffsetTree::lookup(), main(), rosetta_binders::utility_vector_binder< Vector, L, T, Allocator >::maybe_has_equal_operator(), merge_motifs(), minimize_with_constraints(), fmt::BufferedFile::operator Proxy(), fmt::File::operator Proxy(), numeric::interpolation::TempStruct< T, N >::operator()(), numeric::interpolation::TempStruct< T, 1 >::operator()(), numeric::operator<<(), numeric::sphericalVector< typename >::operator=(), numeric::xyzTriple< typename >::operator=(), numeric::xyzVector< core::Real >::operator=(), fmt::BasicWriter< Char >::prepare_int_buffer(), ObjexxFCL::CArrayP< typename >::Proxy(), basic::sampling::orientations::QuaternionGrid::QuaternionGrid(), numeric::read_probabilities_or_die(), numeric::MathNTensor< double, 2 >::replace_layer(), numeric::geometry::BoundingBox< Vector >::reset(), myMC::roll(), ObjexxFCL::scientific_Fstring_of(), ObjexxFCL::scientific_string_of(), numeric::geometry::BoundingBox< Vector >::set_lower(), numeric::geometry::BoundingBox< Vector >::set_upper(), numeric::fourier::SHT::setup_Pmls(), sigmoid_train(), binder::simplify_std_class_name(), binder::Context::sort_binders(), numeric::interpolation::spline::spline_second_derivative(), binder::standard_name(), utility::strip(), svm_load_model(), svm_predict_values(), svm_save_model(), svm_train(), utility::json_spirit::to_str(), numeric::interpolation::spline::PolycubicSpline< N >::train(), numeric::kinematic_closure::triaxialCoefficients(), numeric::kinematic_closure::radians::triaxialCoefficients(), fmt::BasicWriter< Char >::write_double(), and fmt::BasicWriter< Char >::write_int().

RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::qfht_K1

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::qfht_K2

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::radius

Referenced by add_rosetta_options_2(), and main().

RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::resolution_cutoff_high

Referenced by add_rosetta_options_2(), and main().

RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::resolution_cutoff_low

Referenced by add_rosetta_options_2(), and main().

BooleanOptionKey const basic::options::OptionKeys::score::fiber_diffraction::rfactor_refinement

Referenced by add_rosetta_options_2().