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Rosetta
2020.50
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Variables | |
BooleanOptionKey const | fiber_diffraction |
FileOptionKey const | layer_lines |
RealOptionKey const | a |
RealOptionKey const | b |
RealOptionKey const | p |
RealOptionKey const | radius |
RealOptionKey const | resolution_cutoff_low |
RealOptionKey const | resolution_cutoff_high |
IntegerOptionKey const | max_bessel_order |
IntegerOptionKey const | cn_symmetry |
RealOptionKey const | b_factor |
RealOptionKey const | b_factor_solv |
RealOptionKey const | b_factor_solv_K |
RealOptionKey const | grid_reso |
IntegerOptionKey const | grid_r |
IntegerOptionKey const | grid_phi |
IntegerOptionKey const | grid_z |
RealOptionKey const | qfht_K1 |
RealOptionKey const | qfht_K2 |
IntegerOptionKey const | chi_iterations |
BooleanOptionKey const | rfactor_refinement |
BooleanOptionKey const | output_fiber_spectra |
IntegerOptionKey const | gpu_processor |
RealOptionKey const | centroid_density_mass |
RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::a |
Referenced by add_rosetta_options_2(), numeric::angle_radians(), numeric::angles_between_0_180(), basic::calc_quadratic(), numeric::alignment::QCPKernel< Real >::calc_rmsd_Theobald_method(), ObjexxFCL::cross(), ObjexxFCL::cross_product(), numeric::cubic_polynomial_from_spline(), numeric::expression_parser::MultiplyExpression::differentiate(), numeric::dihedral_radians(), ObjexxFCL::distance(), ObjexxFCL::distance_squared(), ObjexxFCL::dot(), ObjexxFCL::dot_product(), numeric::linear_algebra::epslon(), basic::sampling::orientations::Quaternion::euler(), binder::function_arguments_for_lambda(), binder::function_arguments_for_py_overload(), numeric::UniformRotationSampler::generateIcosahedralSamples(), get_gremlin_d_and_width(), numeric::xyzTransform< numeric::Real >::hash64(), numeric::interpolation::periodic_range::full::interpolated(), numeric::interpolation::periodic_range::half::interpolated(), numeric::xyzMatrix< T >::inverse(), numeric::fourier::local_max(), main(), make_fragments(), numeric::linear_algebra::minimum_bounding_ellipse(), numeric::interpolation::multilinear_interpolation(), ObjexxFCL::operator<<(), numeric::kinematic_closure::operator<<(), basic::sampling::orientations::Permute::Permute(), numeric::linear_algebra::point_in_ellipse(), numeric::linear_algebra::qzhes(), numeric::linear_algebra::qzit(), numeric::linear_algebra::qzval(), numeric::linear_algebra::qzvec(), ObjexxFCL::read_binary(), ObjexxFCL::CArray< typename >::resize(), ObjexxFCL::CArrayP< typename >::resize(), numeric::linear_algebra::rgg(), numeric::model_quality::rsym_eigenval(), numeric::kinematic_closure::sincos(), numeric::kinematic_closure::radians::sincos(), numeric::interpolation::spline::spline_interpolate(), numeric::linear_algebra::sum_of_square_differences(), numeric::linear_algebra::svdcmp(), utility::swap(), numeric::kinematic_closure::test_bondangle(), numeric::kinematic_closure::test_eucDistance(), numeric::kinematic_closure::test_scpn(), numeric::kinematic_closure::test_torsion(), ObjexxFCL::transposed(), numeric::statistics::w(), and ObjexxFCL::write_binary().
RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::b |
Referenced by binder::Context::add(), add_rosetta_options_2(), numeric::angle_radians(), numeric::angles_between_0_180(), binder::base_default_default_constructor_available(), binder::Context::bind(), binder::bind_member_functions_for_call_back(), binder::ClassBinder::bind_nested_classes(), binder::binding_template_bases(), basic::PyTracer::buf(), basic::calc_quadratic(), numeric::alignment::QCPKernel< Real >::calc_rmsd_Theobald_method(), binder::Context::create_all_nested_namespaces(), ObjexxFCL::cross(), ObjexxFCL::cross_product(), numeric::cubic_polynomial_from_spline(), numeric::geometry::hashing::xyzStripeHash::debug_pdb(), numeric::expression_parser::MultiplyExpression::differentiate(), numeric::dihedral_radians(), ObjexxFCL::distance(), ObjexxFCL::distance_squared(), ObjexxFCL::dot(), ObjexxFCL::dot_product(), numeric::linear_algebra::epslon(), utility::pointer::equal(), basic::sampling::orientations::Quaternion::euler(), ObjexxFCL::FArray1D< double >::FArray1D(), find_neighbors_directional(), numeric::UniformRotationSampler::generateIcosahedralSamples(), get_gremlin_d_and_width(), numeric::xyzTransform< numeric::Real >::hash64(), numeric::geometry::hashing::xyzStripeHash::init(), binder::is_callback_structure_constructible(), binder::is_callback_structure_needed(), binder::is_inherited_from_enable_shared_from_this(), ObjexxFCL::Fstring::is_type(), ObjexxFCL::KeyFArray1D< typename >::KeyFArray1D(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >::legal_string(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >::legal_string(), main(), binder::ClassBinder::maybe_base_classes(), numeric::linear_algebra::minimum_bounding_ellipse(), numeric::kinematic_closure::modrf(), utility::keys::operator!=(), ObjexxFCL::operator!=(), utility::operator+(), ObjexxFCL::operator+(), utility::operator-(), ObjexxFCL::operator-(), numeric::kinematic_closure::operator<<(), utility::operator|(), basic::sampling::orientations::Permute::Permute(), numeric::linear_algebra::point_in_ellipse(), numeric::linear_algebra::qzhes(), numeric::linear_algebra::qzit(), numeric::linear_algebra::qzval(), numeric::linear_algebra::qzvec(), numeric::linear_algebra::rgg(), numeric::model_quality::rsym_eigenval(), basic::svd::SVD_Solver::set_vector_b(), numeric::geometry::hashing::xyzStripeHashWithMeta< float >::short_max(), numeric::geometry::hashing::xyzStripeHash::short_max(), numeric::geometry::hashing::xyzStripeHashWithMeta< float >::short_min(), numeric::geometry::hashing::xyzStripeHash::short_min(), binder::Context::sort_binders(), numeric::interpolation::spline::spline_interpolate(), utility::keys::KeyLookup< K >::stripped_whitespace(), numeric::kinematic_closure::test_bondangle(), numeric::kinematic_closure::test_eucDistance(), numeric::kinematic_closure::test_scpn(), numeric::kinematic_closure::test_torsion(), numeric::kinematic_closure::triaxialCoefficients(), numeric::kinematic_closure::radians::triaxialCoefficients(), ObjexxFCL::Fstring::type_of(), numeric::geometry::hashing::xyzStripeHashWithMeta< float >::ushort_max(), numeric::geometry::hashing::xyzStripeHash::ushort_max(), numeric::geometry::hashing::xyzStripeHashWithMeta< float >::ushort_min(), numeric::geometry::hashing::xyzStripeHash::ushort_min(), BinderVisitor::VisitCXXRecordDecl(), BinderVisitor::VisitEnumDecl(), BinderVisitor::VisitFunctionDecl(), and utility::options::OptionCollection::wrapped().
RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::b_factor |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::b_factor_solv |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::b_factor_solv_K |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::centroid_density_mass |
Referenced by add_rosetta_options_2().
IntegerOptionKey const basic::options::OptionKeys::score::fiber_diffraction::chi_iterations |
Referenced by add_rosetta_options_2(), and main().
IntegerOptionKey const basic::options::OptionKeys::score::fiber_diffraction::cn_symmetry |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::fiber_diffraction::fiber_diffraction |
Referenced by add_rosetta_options_2().
IntegerOptionKey const basic::options::OptionKeys::score::fiber_diffraction::gpu_processor |
Referenced by add_rosetta_options_2().
IntegerOptionKey const basic::options::OptionKeys::score::fiber_diffraction::grid_phi |
Referenced by add_rosetta_options_2().
IntegerOptionKey const basic::options::OptionKeys::score::fiber_diffraction::grid_r |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::grid_reso |
Referenced by add_rosetta_options_2().
IntegerOptionKey const basic::options::OptionKeys::score::fiber_diffraction::grid_z |
Referenced by add_rosetta_options_2().
FileOptionKey const basic::options::OptionKeys::score::fiber_diffraction::layer_lines |
Referenced by add_rosetta_options_2().
IntegerOptionKey const basic::options::OptionKeys::score::fiber_diffraction::max_bessel_order |
Referenced by add_rosetta_options_2().
BooleanOptionKey const basic::options::OptionKeys::score::fiber_diffraction::output_fiber_spectra |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::p |
Referenced by binder::add_relevant_include_for_decl(), add_rosetta_options_2(), binder::bind_function(), utility::down_cast(), ObjexxFCL::format::F(), basic::resource_manager::locator::FileStream::FileStream(), ObjexxFCL::fixed_Fstring_of(), ObjexxFCL::fixed_string_of(), fmt::BasicFormatter< CharType, ArgFormatter >::format(), binder::function_arguments_for_py_overload(), ObjexxFCL::general_Fstring_of(), ObjexxFCL::general_string_of(), fmt::BasicWriter< Char >::get(), numeric::interpolation::spline::SplineGenerator::get_interpolator(), get_max_and_intervals(), harvest_scores(), numeric::hsv_to_rgb(), numeric::geometry::hashing::SixDOffsetTree::init(), numeric::interpolation::InterpolatedPotential< N >::InterpolatedPotential(), binder::is_bindable(), numeric::fourier::kf_bfly_generic(), numeric::fourier::kf_factor(), numeric::fourier::kf_work(), numeric::statistics::kl_divergence(), numeric::geometry::hashing::SixDOffsetTree::lookup(), main(), rosetta_binders::utility_vector_binder< Vector, L, T, Allocator >::maybe_has_equal_operator(), merge_motifs(), minimize_with_constraints(), fmt::BufferedFile::operator Proxy(), fmt::File::operator Proxy(), numeric::interpolation::TempStruct< T, N >::operator()(), numeric::interpolation::TempStruct< T, 1 >::operator()(), numeric::operator<<(), numeric::sphericalVector< typename >::operator=(), numeric::xyzTriple< typename >::operator=(), numeric::xyzVector< core::Real >::operator=(), fmt::BasicWriter< Char >::prepare_int_buffer(), ObjexxFCL::CArrayP< typename >::Proxy(), basic::sampling::orientations::QuaternionGrid::QuaternionGrid(), numeric::read_probabilities_or_die(), numeric::MathNTensor< double, 2 >::replace_layer(), numeric::geometry::BoundingBox< Vector >::reset(), myMC::roll(), ObjexxFCL::scientific_Fstring_of(), ObjexxFCL::scientific_string_of(), numeric::geometry::BoundingBox< Vector >::set_lower(), numeric::geometry::BoundingBox< Vector >::set_upper(), numeric::fourier::SHT::setup_Pmls(), sigmoid_train(), binder::simplify_std_class_name(), binder::Context::sort_binders(), numeric::interpolation::spline::spline_second_derivative(), binder::standard_name(), utility::strip(), svm_load_model(), svm_predict_values(), svm_save_model(), svm_train(), utility::json_spirit::to_str(), numeric::interpolation::spline::PolycubicSpline< N >::train(), numeric::kinematic_closure::triaxialCoefficients(), numeric::kinematic_closure::radians::triaxialCoefficients(), fmt::BasicWriter< Char >::write_double(), and fmt::BasicWriter< Char >::write_int().
RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::qfht_K1 |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::qfht_K2 |
Referenced by add_rosetta_options_2().
RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::radius |
Referenced by add_rosetta_options_2(), and main().
RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::resolution_cutoff_high |
Referenced by add_rosetta_options_2(), and main().
RealOptionKey const basic::options::OptionKeys::score::fiber_diffraction::resolution_cutoff_low |
Referenced by add_rosetta_options_2(), and main().
BooleanOptionKey const basic::options::OptionKeys::score::fiber_diffraction::rfactor_refinement |
Referenced by add_rosetta_options_2().