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frags.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces

 basic
 Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
 
 basic::options
 
 basic::options::OptionKeys
 
 basic::options::OptionKeys::frags
 
 basic::options::OptionKeys::frags::scoring
 
 basic::options::OptionKeys::frags::picking
 
 basic::options::OptionKeys::frags::nonlocal
 
 basic::options::OptionKeys::frags::contacts
 
 basic::options::OptionKeys::frags::ABEGO
 

Variables

BooleanOptionKey const basic::options::OptionKeys::frags::frags
 
IntegerOptionKey const basic::options::OptionKeys::frags::j
 
BooleanOptionKey const basic::options::OptionKeys::frags::filter_JC
 
BooleanOptionKey const basic::options::OptionKeys::frags::bounded_protocol
 
BooleanOptionKey const basic::options::OptionKeys::frags::keep_all_protocol
 
BooleanOptionKey const basic::options::OptionKeys::frags::quota_protocol
 
BooleanOptionKey const basic::options::OptionKeys::frags::nonlocal_pairs
 
BooleanOptionKey const basic::options::OptionKeys::frags::fragment_contacts
 
BooleanOptionKey const basic::options::OptionKeys::frags::p_value_selection
 
IntegerOptionKey const basic::options::OptionKeys::frags::n_frags
 
FileOptionKey const basic::options::OptionKeys::frags::allowed_pdb
 
StringVectorOptionKey const basic::options::OptionKeys::frags::ss_pred
 
FileOptionKey const basic::options::OptionKeys::frags::spine_x
 
FileOptionKey const basic::options::OptionKeys::frags::depth
 
FileOptionKey const basic::options::OptionKeys::frags::denied_pdb
 
IntegerVectorOptionKey const basic::options::OptionKeys::frags::frag_sizes
 
BooleanOptionKey const basic::options::OptionKeys::frags::write_ca_coordinates
 
BooleanOptionKey const basic::options::OptionKeys::frags::write_scores
 
BooleanOptionKey const basic::options::OptionKeys::frags::annotate
 
IntegerOptionKey const basic::options::OptionKeys::frags::nr_large_copies
 
IntegerOptionKey const basic::options::OptionKeys::frags::n_candidates
 
BooleanOptionKey const basic::options::OptionKeys::frags::write_rama_tables
 
RealOptionKey const basic::options::OptionKeys::frags::rama_C
 
RealOptionKey const basic::options::OptionKeys::frags::rama_B
 
RealOptionKey const basic::options::OptionKeys::frags::sigmoid_cs_A
 
RealOptionKey const basic::options::OptionKeys::frags::sigmoid_cs_B
 
RealOptionKey const basic::options::OptionKeys::frags::seqsim_H
 
RealOptionKey const basic::options::OptionKeys::frags::seqsim_E
 
RealOptionKey const basic::options::OptionKeys::frags::seqsim_L
 
RealOptionKey const basic::options::OptionKeys::frags::rama_norm
 
StringOptionKey const basic::options::OptionKeys::frags::describe_fragments
 
RealOptionKey const basic::options::OptionKeys::frags::picking_old_max_score
 
BooleanOptionKey const basic::options::OptionKeys::frags::write_sequence_only
 
BooleanOptionKey const basic::options::OptionKeys::frags::output_silent
 
BooleanOptionKey const basic::options::OptionKeys::frags::output_index
 
BooleanOptionKey const basic::options::OptionKeys::frags::score_output_silent
 
BooleanOptionKey const basic::options::OptionKeys::frags::scoring::scoring
 
FileOptionKey const basic::options::OptionKeys::frags::scoring::config
 
StringOptionKey const basic::options::OptionKeys::frags::scoring::profile_score
 
BooleanOptionKey const basic::options::OptionKeys::frags::picking::picking
 
StringOptionKey const basic::options::OptionKeys::frags::picking::selecting_rule
 
StringOptionKey const basic::options::OptionKeys::frags::picking::selecting_scorefxn
 
FileOptionKey const basic::options::OptionKeys::frags::picking::quota_config_file
 
IntegerVectorOptionKey const basic::options::OptionKeys::frags::picking::query_pos
 
BooleanOptionKey const basic::options::OptionKeys::frags::nonlocal::nonlocal
 
BooleanOptionKey const basic::options::OptionKeys::frags::nonlocal::relax_input
 
BooleanOptionKey const basic::options::OptionKeys::frags::nonlocal::relax_input_with_coordinate_constraints
 
IntegerOptionKey const basic::options::OptionKeys::frags::nonlocal::relax_frags_repeats
 
BooleanOptionKey const basic::options::OptionKeys::frags::nonlocal::single_chain
 
RealOptionKey const basic::options::OptionKeys::frags::nonlocal::min_contacts_per_res
 
RealOptionKey const basic::options::OptionKeys::frags::nonlocal::max_ddg_score
 
RealOptionKey const basic::options::OptionKeys::frags::nonlocal::max_rmsd_after_relax
 
BooleanOptionKey const basic::options::OptionKeys::frags::nonlocal::output_frags_pdbs
 
BooleanOptionKey const basic::options::OptionKeys::frags::nonlocal::output_idealized
 
BooleanOptionKey const basic::options::OptionKeys::frags::nonlocal::output_silent
 
BooleanOptionKey const basic::options::OptionKeys::frags::contacts::contacts
 
IntegerOptionKey const basic::options::OptionKeys::frags::contacts::min_seq_sep
 
RealVectorOptionKey const basic::options::OptionKeys::frags::contacts::dist_cutoffs
 
RealOptionKey const basic::options::OptionKeys::frags::contacts::centroid_distance_scale_factor
 
StringVectorOptionKey const basic::options::OptionKeys::frags::contacts::type
 
IntegerOptionKey const basic::options::OptionKeys::frags::contacts::neighbors
 
BooleanOptionKey const basic::options::OptionKeys::frags::contacts::output_all
 
BooleanOptionKey const basic::options::OptionKeys::frags::ABEGO::ABEGO
 
RealOptionKey const basic::options::OptionKeys::frags::ABEGO::phi_psi_range_A
 

Detailed Description

basic::options::OptionKeys collection

Author
Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)
James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)