basic::options::OptionKeys::out::file Namespace Reference

Variables
BooleanOptionKey const	file
StringOptionKey const	o
FileOptionKey const	design_contrast
StringOptionKey const	residue_type_set
BooleanOptionKey const	srlz
StringOptionKey const	atom_tree_diff
IntegerOptionKey const	atom_tree_diff_bb
IntegerOptionKey const	atom_tree_diff_sc
IntegerOptionKey const	atom_tree_diff_bl
StringOptionKey const	alignment
StringOptionKey const	score_only
StringOptionKey const	scorefile
StringOptionKey const	scorefile_format
StringOptionKey const	silent
StringOptionKey const	silent_struct_type
BooleanOptionKey const	silent_print_all_score_headers
BooleanOptionKey const	raw
BooleanOptionKey const	weight_silent_scores
BooleanOptionKey const	silent_preserve_H
BooleanOptionKey const	fullatom
BooleanOptionKey const	suppress_zero_occ_pdb_output
BooleanOptionKey const	output_ligands_as_separate_chains
BooleanOptionKey const	output_virtual
BooleanOptionKey const	output_virtual_zero_occ
BooleanOptionKey const	no_chainend_ter
BooleanOptionKey const	no_output_cen
BooleanOptionKey const	output_orbitals
BooleanOptionKey const	renumber_pdb
BooleanOptionKey const	pdb_parents
BooleanOptionKey const	per_chain_renumbering
BooleanOptionKey const	output_secondary_structure
BooleanOptionKey const	do_not_autoassign_SS
BooleanOptionKey const	output_torsions
BooleanOptionKey const	use_occurrence_data
BooleanOptionKey const	pdb_comments
BooleanOptionKey const	force_nonideal_structure
StringOptionKey const	set_pdb_author
BooleanOptionKey const	write_pdb_title_section_records
BooleanOptionKey const	write_pdb_link_records
BooleanOptionKey const	use_pdb_format_HETNAM_records
BooleanOptionKey const	write_pdb_parametric_info
BooleanOptionKey const	write_glycan_pdb_codes
BooleanOptionKey const	write_seqres_records
BooleanOptionKey const	output_pose_energies_table
BooleanOptionKey const	output_pose_cache_data
BooleanOptionKey const	output_pose_fold_tree
BooleanOptionKey const	output_only_asymmetric_unit
BooleanOptionKey const	cif_extra_data_separate_file
BooleanOptionKey const	dont_rewrite_dunbrack_database
StringOptionKey const	frag_prefix
BooleanOptionKey const	no_extra_sdf_data
BooleanOptionKey const	no_scores_in_pdb

Variable Documentation

StringOptionKey const basic::options::OptionKeys::out::file::alignment

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::out::file::atom_tree_diff

Referenced by add_rosetta_options_0(), and main().

IntegerOptionKey const basic::options::OptionKeys::out::file::atom_tree_diff_bb

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::out::file::atom_tree_diff_bl

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::out::file::atom_tree_diff_sc

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::cif_extra_data_separate_file

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::out::file::design_contrast

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::do_not_autoassign_SS

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::dont_rewrite_dunbrack_database

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::file

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::force_nonideal_structure

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::out::file::frag_prefix

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::fullatom

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::no_chainend_ter

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::no_extra_sdf_data

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::no_output_cen

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::no_scores_in_pdb

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::out::file::o

Referenced by add_rosetta_options_0(), basic::Emitter::escape_string(), fill_optional_options(), harvest_motifs(), harvest_motifs_one(), main(), utility::options::OptionCollection::merged(), numeric::random::WeightedReservoirItem< T >::operator<(), output_results(), basic::resource_manager::show_option_map(), and basic::resource_manager::show_option_vector_map().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_ligands_as_separate_chains

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_only_asymmetric_unit

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_orbitals

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_pose_cache_data

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_pose_energies_table

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_pose_fold_tree

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_secondary_structure

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_torsions

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_virtual

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_virtual_zero_occ

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::pdb_comments

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::pdb_parents

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::per_chain_renumbering

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::raw

Referenced by add_rosetta_options_0(), and basic::Tracer::set_ios_hook().

BooleanOptionKey const basic::options::OptionKeys::out::file::renumber_pdb

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::out::file::residue_type_set

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::out::file::score_only

Referenced by add_rosetta_options_0(), and main().

StringOptionKey const basic::options::OptionKeys::out::file::scorefile

Referenced by add_rosetta_options_0(), calc_rama_scores(), calc_scores(), correct_dunbrack(), correct_rama(), main(), ScoreFragmentSetMover::run(), and FragmentAssemblyMover::run().

StringOptionKey const basic::options::OptionKeys::out::file::scorefile_format

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::out::file::set_pdb_author

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::out::file::silent

Referenced by add_rosetta_options_0(), fill_optional_options(), main(), report_and_dump(), rna_fullatom_minimize_test(), and StepWiseJobQueen::StepWiseJobQueen().

BooleanOptionKey const basic::options::OptionKeys::out::file::silent_preserve_H

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::silent_print_all_score_headers

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::out::file::silent_struct_type

Referenced by add_rosetta_options_0(), fill_optional_options(), and main().

BooleanOptionKey const basic::options::OptionKeys::out::file::srlz

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::suppress_zero_occ_pdb_output

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::use_occurrence_data

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::use_pdb_format_HETNAM_records

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::weight_silent_scores

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::write_glycan_pdb_codes

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::write_pdb_link_records

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::write_pdb_parametric_info

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::write_pdb_title_section_records

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::write_seqres_records

Referenced by add_rosetta_options_0().