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Rosetta
2020.50
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StringOptionKey const basic::options::OptionKeys::out::file::alignment |
Referenced by add_rosetta_options_0().
StringOptionKey const basic::options::OptionKeys::out::file::atom_tree_diff |
Referenced by add_rosetta_options_0(), and main().
IntegerOptionKey const basic::options::OptionKeys::out::file::atom_tree_diff_bb |
Referenced by add_rosetta_options_0().
IntegerOptionKey const basic::options::OptionKeys::out::file::atom_tree_diff_bl |
Referenced by add_rosetta_options_0().
IntegerOptionKey const basic::options::OptionKeys::out::file::atom_tree_diff_sc |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::cif_extra_data_separate_file |
Referenced by add_rosetta_options_0().
FileOptionKey const basic::options::OptionKeys::out::file::design_contrast |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::do_not_autoassign_SS |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::dont_rewrite_dunbrack_database |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::file |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::force_nonideal_structure |
Referenced by add_rosetta_options_0().
StringOptionKey const basic::options::OptionKeys::out::file::frag_prefix |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::fullatom |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::no_chainend_ter |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::no_extra_sdf_data |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::no_output_cen |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::no_scores_in_pdb |
Referenced by add_rosetta_options_0().
StringOptionKey const basic::options::OptionKeys::out::file::o |
Referenced by add_rosetta_options_0(), basic::Emitter::escape_string(), fill_optional_options(), harvest_motifs(), harvest_motifs_one(), main(), utility::options::OptionCollection::merged(), numeric::random::WeightedReservoirItem< T >::operator<(), output_results(), basic::resource_manager::show_option_map(), and basic::resource_manager::show_option_vector_map().
BooleanOptionKey const basic::options::OptionKeys::out::file::output_ligands_as_separate_chains |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::output_only_asymmetric_unit |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::output_orbitals |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::output_pose_cache_data |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::output_pose_energies_table |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::output_pose_fold_tree |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::output_secondary_structure |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::output_torsions |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::output_virtual |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::output_virtual_zero_occ |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::pdb_comments |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::pdb_parents |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::per_chain_renumbering |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::raw |
Referenced by add_rosetta_options_0(), and basic::Tracer::set_ios_hook().
BooleanOptionKey const basic::options::OptionKeys::out::file::renumber_pdb |
Referenced by add_rosetta_options_0().
StringOptionKey const basic::options::OptionKeys::out::file::residue_type_set |
Referenced by add_rosetta_options_0().
StringOptionKey const basic::options::OptionKeys::out::file::score_only |
Referenced by add_rosetta_options_0(), and main().
StringOptionKey const basic::options::OptionKeys::out::file::scorefile |
StringOptionKey const basic::options::OptionKeys::out::file::scorefile_format |
Referenced by add_rosetta_options_0().
StringOptionKey const basic::options::OptionKeys::out::file::set_pdb_author |
Referenced by add_rosetta_options_0().
StringOptionKey const basic::options::OptionKeys::out::file::silent |
BooleanOptionKey const basic::options::OptionKeys::out::file::silent_preserve_H |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::silent_print_all_score_headers |
Referenced by add_rosetta_options_0().
StringOptionKey const basic::options::OptionKeys::out::file::silent_struct_type |
Referenced by add_rosetta_options_0(), fill_optional_options(), and main().
BooleanOptionKey const basic::options::OptionKeys::out::file::srlz |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::suppress_zero_occ_pdb_output |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::use_occurrence_data |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::use_pdb_format_HETNAM_records |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::weight_silent_scores |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::write_glycan_pdb_codes |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::write_pdb_link_records |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::write_pdb_parametric_info |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::write_pdb_title_section_records |
Referenced by add_rosetta_options_0().
BooleanOptionKey const basic::options::OptionKeys::out::file::write_seqres_records |
Referenced by add_rosetta_options_0().