Rosetta  2019.40
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Variables
basic::options::OptionKeys::out::file Namespace Reference

Variables

BooleanOptionKey const file
 
StringOptionKey const o
 
FileOptionKey const design_contrast
 
StringOptionKey const residue_type_set
 
BooleanOptionKey const srlz
 
StringOptionKey const atom_tree_diff
 
IntegerOptionKey const atom_tree_diff_bb
 
IntegerOptionKey const atom_tree_diff_sc
 
IntegerOptionKey const atom_tree_diff_bl
 
StringOptionKey const alignment
 
StringOptionKey const score_only
 
StringOptionKey const scorefile
 
StringOptionKey const scorefile_format
 
StringOptionKey const silent
 
StringOptionKey const silent_struct_type
 
BooleanOptionKey const silent_print_all_score_headers
 
BooleanOptionKey const raw
 
BooleanOptionKey const weight_silent_scores
 
BooleanOptionKey const silent_preserve_H
 
BooleanOptionKey const fullatom
 
BooleanOptionKey const suppress_zero_occ_pdb_output
 
BooleanOptionKey const output_ligands_as_separate_chains
 
BooleanOptionKey const output_virtual
 
BooleanOptionKey const output_virtual_zero_occ
 
BooleanOptionKey const no_chainend_ter
 
BooleanOptionKey const no_output_cen
 
BooleanOptionKey const output_orbitals
 
BooleanOptionKey const renumber_pdb
 
BooleanOptionKey const pdb_parents
 
BooleanOptionKey const per_chain_renumbering
 
BooleanOptionKey const output_secondary_structure
 
BooleanOptionKey const do_not_autoassign_SS
 
BooleanOptionKey const output_torsions
 
BooleanOptionKey const use_occurrence_data
 
BooleanOptionKey const pdb_comments
 
BooleanOptionKey const force_nonideal_structure
 
StringOptionKey const set_pdb_author
 
BooleanOptionKey const write_pdb_title_section_records
 
BooleanOptionKey const write_pdb_link_records
 
BooleanOptionKey const use_pdb_format_HETNAM_records
 
BooleanOptionKey const write_pdb_parametric_info
 
BooleanOptionKey const write_glycan_pdb_codes
 
BooleanOptionKey const write_seqres_records
 
BooleanOptionKey const output_pose_energies_table
 
BooleanOptionKey const output_pose_cache_data
 
BooleanOptionKey const output_pose_fold_tree
 
BooleanOptionKey const output_only_asymmetric_unit
 
BooleanOptionKey const cif_extra_data_separate_file
 
BooleanOptionKey const dont_rewrite_dunbrack_database
 
StringOptionKey const frag_prefix
 
BooleanOptionKey const no_extra_sdf_data
 
BooleanOptionKey const no_scores_in_pdb
 

Variable Documentation

StringOptionKey const basic::options::OptionKeys::out::file::alignment

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::out::file::atom_tree_diff

Referenced by add_rosetta_options_0(), and main().

IntegerOptionKey const basic::options::OptionKeys::out::file::atom_tree_diff_bb

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::out::file::atom_tree_diff_bl

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::out::file::atom_tree_diff_sc

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::cif_extra_data_separate_file

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::out::file::design_contrast

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::do_not_autoassign_SS

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::dont_rewrite_dunbrack_database

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::file

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::force_nonideal_structure

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::out::file::frag_prefix

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::fullatom

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::no_chainend_ter

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::no_extra_sdf_data

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::no_output_cen

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::no_scores_in_pdb

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::out::file::o
BooleanOptionKey const basic::options::OptionKeys::out::file::output_ligands_as_separate_chains

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_only_asymmetric_unit

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_orbitals

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_pose_cache_data

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_pose_energies_table

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_pose_fold_tree

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_secondary_structure

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_torsions

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_virtual

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::output_virtual_zero_occ

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::pdb_comments

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::pdb_parents

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::per_chain_renumbering

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::raw
BooleanOptionKey const basic::options::OptionKeys::out::file::renumber_pdb

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::out::file::residue_type_set

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::out::file::score_only

Referenced by add_rosetta_options_0(), and main().

StringOptionKey const basic::options::OptionKeys::out::file::scorefile
StringOptionKey const basic::options::OptionKeys::out::file::scorefile_format

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::out::file::set_pdb_author

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::out::file::silent
BooleanOptionKey const basic::options::OptionKeys::out::file::silent_preserve_H

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::silent_print_all_score_headers

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::out::file::silent_struct_type
BooleanOptionKey const basic::options::OptionKeys::out::file::srlz

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::suppress_zero_occ_pdb_output

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::use_occurrence_data

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::use_pdb_format_HETNAM_records

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::weight_silent_scores

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::write_glycan_pdb_codes

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::write_pdb_link_records

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::write_pdb_parametric_info

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::write_pdb_title_section_records

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::out::file::write_seqres_records

Referenced by add_rosetta_options_0().