Rosetta  2020.37
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demo.D110_DNA_interface Namespace Reference

Functions

def sample_dna_interface
 Methods. More...
 

Variables

int counter = 0
 AddPyMOLObserver(test_pose, True) More...
 
tuple parser = optparse.OptionParser()
 INTERPRETING RESULTS. More...
 
string default = '../test/data/dna_test.pdb'
 
string help = 'the PDB file containing the DNA and protein to dock'
 
 pdb_filename = options.pdb_filename
 
 partners = options.partners
 
tuple jobs = int(options.jobs)
 
 job_output = options.job_output
 

Function Documentation

def demo.D110_DNA_interface.sample_dna_interface (   pdb_filename,
  partners,
  jobs = 1,
  job_output = 'dna_output' 
)

Methods.

Performs DNA-protein docking using Rosetta fullatom docking (DockingHighRes)
    on the DNA-protein complex in  <pdb_filename>  using the relative chain
    <partners>  .
    <jobs>  trajectories are performed with output structures named
    <job_output>_(job#).pdb.

References pyrosetta.create_score_function, pyrosetta.distributed.io.pose_from_file, and pyrosetta.Vector1().

Variable Documentation

int demo.D110_DNA_interface.counter = 0

AddPyMOLObserver(test_pose, True)

string demo.D110_DNA_interface.default = '../test/data/dna_test.pdb'
string demo.D110_DNA_interface.help = 'the PDB file containing the DNA and protein to dock'
demo.D110_DNA_interface.job_output = options.job_output
tuple demo.D110_DNA_interface.jobs = int(options.jobs)
tuple demo.D110_DNA_interface.parser = optparse.OptionParser()

INTERPRETING RESULTS.

COMMANDLINE COMPATIBILITY

demo.D110_DNA_interface.partners = options.partners
demo.D110_DNA_interface.pdb_filename = options.pdb_filename